Amyelois transitella (navel orangeworm): 106133201
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Entry
106133201 CDS
T09957
Name
(RefSeq) nucleoporin 88 isoform X1
KO
K14318
nuclear pore complex protein Nup88
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106133201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106133201
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106133201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
Motif
Other DBs
NCBI-GeneID:
106133201
NCBI-ProteinID:
XP_060806520
LinkDB
All DBs
Position
22:join(1552419..1552628,1638919..1639088,1664119..1664232,1665366..1665578,1670448..1670613,1671760..1671879,1672698..1672797,1675376..1675541,1677012..1677111,1677595..1677708,1678255..1678392,1679585..1679673,1680148..1680472)
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AA seq
674 aa
AA seq
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MDSRFFETKLVNHKIFADIKDSLTENPSGKLCNLMELRDDVLYLWNSKENCLFALNLKHL
EEHDEETPYQKLHLLSPPAFQVERVISSACGSRLCVWGSRGVTVAELPSRWGRGGLFESG
SQTVLCKSHTLDERFLYSQGEVRRVHWHPTSLSHLMVLVSDNTIRLYNIAIKSGPKLVKI
LTIGAKPCSQLAGRTILDSLGDTAVDFTTLPTSEDLLILRGNGDVYMMRCELDTKSGVKP
ILSGPLAMYPPADDNYGSESCSIAAVGAHSPALVVVATCSAALYHCLLLPHTSEKDDSDT
HALYVVEAVELNIALNPDQDMEHSYPVHLYPCTSNTYACVHAGGVHSVSVPLLAHLRDYA
LADDEESETALSSLWSKTSVARHLVCTAGARGRPPAALAALAPPLPAALVLCPDGRLLYR
TLEPYDLEEELYKELQLKNPALEDDDIASILKERQKMSFTAIIQEILTRDVSQPILNVNK
AEEPSPKESLEIVTQATMKLRAEYMSRQQRACDALHRKLHALQALMKQHQSWAQDLQAEI
NDAHLQSAVLQEKCALAEKHQDDIKYRCSAVIRKMRGSTATSAAERELLAELTRYKGMGE
RLRERINMLQLHARNKTDEVRLLFNSTYNFLDIFNKHFTRCLLRVVGRTNALQGHGGEAE
REDQHASATCQEQD
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcgtttcttcgagactaaactggttaaccataaaatatttgctgacataaaa
gacagtttaaccgaaaatccaagtggaaagttgtgtaatttgatggaacttagagatgat
gttttgtacttgtggaactctaaagaaaactgtttattcgcattaaacctgaagcatttg
gaagaacatgatgaagaaacgccatatcagaaactccacctgttatcaccaccagcattc
caagtggaacgtgttatcagcagcgcgtgcgggagcaggctgtgcgtgtggggttcccgt
ggggtgacagtggccgagctgccttcaaggtggggaagggggggcctgttcgaatccggc
agccaaactgtactgtgcaagagtcacaccctcgacgagcgcttcctgtactcccaaggc
gaggttcgaagggtccactggcatcccacctcactgtcacatctaatggtgttggtttca
gataatactatcaggctgtacaacatagcgataaaaagcggtccgaaactggtcaagatc
ctgaccataggagctaagccttgcagtcaactcgccggcaggaccatcctggacagtttg
ggcgatacggccgtggacttcacgacactacccacgtccgaagacctgctgatcttgagg
ggaaacggagacgtctatatgatgcggtgtgaactggacactaaaagcggggtcaaaccg
atcctgagcggtccactggctatgtatccaccggccgacgacaactacggctccgagtcg
tgctccatcgcggccgtgggcgcgcacagccccgcgctggtggtggtcgccacttgcagc
gccgcgctgtaccactgcctgctgctgcctcacacgtcggaaaaagatgacagcgacact
cacgccctctacgtggtggaagctgttgaactgaacatcgctctcaatccggaccaagac
atggagcattcctatccggtgcatctgtacccgtgcacgtcgaacacgtacgcgtgcgtc
cacgccggcggggtgcactccgtgagcgtgccgctgttggctcacctcagagactacgcc
ctcgccgatgatgaggaatcagaaacggccctatcctccttatggtccaaaacgagcgta
gcgcgccacctcgtgtgcacggcgggcgcgcgcggccggccgcccgccgccctcgccgcg
ctggccccgccgctgcccgccgcgctcgtgctgtgcccggacggccggctgctctacaga
actctggaaccttacgatctagaagaggagctttacaaagagctgcaactgaagaatcca
gctttggaagacgatgatatcgccagtatccttaaagagcgtcaaaaaatgtcgttcacc
gccatcatacaggagatcctcactcgagacgtgtcgcagccgatcctgaacgtgaacaaa
gctgaagaacccagccctaaggagtccttagagatagtaactcaagctacgatgaaactc
cgcgcggaatacatgtcgcggcaacaacgcgcgtgcgatgcgttgcaccgcaagttgcac
gctctccaggcgctcatgaaacaacaccagtcctgggcacaggacttacaggctgaaatt
aatgacgcccatttgcagtccgccgtgttgcaagagaaatgtgccttggcggagaagcac
caagacgatattaaatatagatgttcggcggtgattcgcaaaatgcgcggcagtaccgcc
accagcgccgctgagagagagttgttggctgaactaacgcggtacaagggcatgggggag
aggctgagggagaggatcaacatgcttcagctacatgccaggaacaagactgacgaggtg
agacttttattcaattctacttacaatttcttagatatttttaataaacattttaccaga
tgtttattaagagttgttggccgaactaacgcgctacaagggcatgggggggaggctgag
agagaggatcaacatgcttcagctacatgccaggaacaagactga
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