KEGG   Amyelois transitella (navel orangeworm): 106133326
Entry
106133326         CDS       T09957                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106133326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106133326
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106133326
Spliceosome [BR:atra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106133326
 Complex C
   U5 SnRNP specific factors
    106133326
SSDB
Motif
Pfam: Sec63 SNRNP200_wHTH DEAD Helicase_PWI ResIII BRR2_plug Helicase_C AAA_22 T4BSS_DotI_IcmL
Other DBs
NCBI-GeneID: 106133326
NCBI-ProteinID: XP_060809124
LinkDB
Position
31:join(1450377..1450421,1450594..1450757,1451039..1451237,1451876..1451987,1453346..1453473,1460564..1460674,1461374..1461490,1462877..1463009,1463778..1463908,1466177..1466363,1467631..1467764,1468463..1468660,1469176..1469320,1470819..1470955,1472255..1472361,1473161..1473278,1474040..1474137,1475415..1475577,1476268..1476445,1477326..1477487,1479737..1479872,1480752..1480983,1481460..1481637,1482198..1482304,1483200..1483321,1483987..1484089,1484607..1484788,1485824..1486004,1486534..1486743,1487359..1487459,1488151..1488281,1489085..1489224,1491298..1491534,1492326..1492507,1493059..1493230,1493672..1493832,1495189..1495340,1496129..1496261,1497031..1497178,1498602..1498778,1499774..1499908,1505259..1505363,1506722..1506961)
AA seq 2143 aa
MADAAARQLQYEYKANSNLVLQADVRLIERRGRDEATGEVLSLSGKLGGTRMGDRAQRTK
PEKAEERKAKRQKRDEATYELTKSKTARVAWADDTPGVLYRPRAQHTRHAYELLLSFMQS
ALGDQPRDILCGACDEVLVVLKNDKLKDLEKKKEIELLLGQIPDERFALLVNLGKKITDF
NISATAEGNTEIDETYGINVQFEESSEEDDEDAYGEVREEDKEDGEGSENEREKESSGED
SDGEGKKNAIHANLTEEQSQKRRDAVLHPMDIDAYWLQRRLSRHFPDAMVSQAKASEVLK
ALAEAADDRDLENRLVLLLGYDCFEFVKTLNKYRHMILYCIRLASAQSDNERAAIREEMS
RQPHLQKILAQLDTGKGDDETSQQSEIPRKRHKAEADTSGGSAVGGARRVLPLEELVFAA
GAHFMANKRCQLPPGSFRKQRKGYEEVHVPALKPKPFDEGETLVAIDKLPKYVQPAFEGF
KTLNRIQSRISKAALESDENLLVCAPTGAGKTNVALLCILREVGRHVNDDGTVNVHDFKM
IYVAPMRSLVQEMVGNFSKRLAPYNMKVSELTGDHQLTREQIEATQLIVCTPEKWDIITR
KGGERSFTNLVRLIIIDEIHLLHDERGPVLEALVARTLRTREQTQEEVRLVGLSATLPNY
TDVAAFLRVKPEHGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKAMEHAGR
NQILVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNPELRELL
PYGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIVKGTQVYSPER
GRWAELGALDVLQMLGRAGRPQYDDKGEGILITNHSELQYYLSLLNQQLPIESQLISTLP
DMLNAEVVLGSVQSVRDAVTWLGYTYLYIRMLRQPALYGVTPEKLQDDPLLELHRADLVH
TAASLLDKAGLIKYERKSGHFQPTELGRIASHFYCTYETMQSYNQLLRPTLGEIELFRVF
SLSAEFKHVTVREEEKLELHKLMERVPIPIKESIEEPSAKINVLLQAYISQLKLEGFALM
ADMVYVTQSAARLLRAIFEIVLHRGWAQLVDKTLALCKMVDRRMWQSMSPLRQFRKMPEE
VIKKLEKKNFPWEKLYELGPNEIGELVRAPKLGKMIHKHIRQFPKLELSTHIQPITRSTL
RVELTITPDFQWDEKVHGQSEAFWILVEDVDSEVILHHEYFLLKEKYSKDEHLVKLFVPV
FEPLPPQCFLRLVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNPKYE
ELYNEIFPQFNPVQTQVFNAVYNSDDNVFVGAPSGSGKSVIAELALLRLLSASAGGRAVY
VLPKDALADIVFADWYHKFGARFNLKVVQLTGETATDHKLLNKGQIIITTAEKWDVLSRR
WKVRKSVQSVALFIVDALQLLGGEEGPVLEVVCSRMRYIASQTGKPIRIVALSLPLADAR
DVSQWLGCNANASFNFHPSVRPLPLELHIQGFNISHAGSRLAAMTKPIYSAVCRHAGGRP
CAVFVPSRRHARLLAADLLALAAAHARPARFLHARPELVAPLLKRVQDKMLKETLSAGVA
YLHEGVEQNDRRVVQQLVESGAVQLCVVAAELAWAFAAHVHTVIVADTHVYNGKLHAYEQ
YPITTVLQMLGRACRPVEDDHSVAVLMCVAHHKTFFTKLLNDCLPLESHLDHRLHDHMNA
EIVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVETTLTDLEQ
SKCIAIEDEMDVQPLNLGMIASYYYINYTTIELFSLSLTSKTKIRGLLEIISSAAEFSEL
VIRHREENIIKALAAKVPHKPQAPSGGVVKYNDPHVKAHVLLQAHLSRMQLPAELQADTQ
KVLVKAIRLIQACVDVVSSSGWLSPAVAAMELAQMVTQAMWAKDSYLRQLPHFTQELVQR
CSEKGVETVFDVMELEDNARAKLLQLSPSEMADVARYCNRYPNVELTYEVKNPRRLSAGK
SIIVEVSLEREDDVGPVIAPFLAQKREEGWWVVIGEPKSNSLLSIKRVSLARSAKVRLDF
VCGAPGRHTYTLYFMSDAYLGADQEYKFTVDVGEANSDSSGEE
NT seq 6432 nt   +upstreamnt  +downstreamnt
atggctgacgcagctgccaggcagctccagtacgagtataaagcgaactccaatctcgta
ctccaagctgatgtaaggctcatagagagacgtggacgagatgaggccactggggaggtc
ttgtccttgtccgggaaactgggagggacaaggatgggcgatcgggctcaacgcaccaag
cccgaaaaagccgaggagagaaaagctaaacgtcaaaagcgcgatgaagctacctacgag
ttgactaaatccaaaacggcccgtgtagcatgggctgatgatacaccaggagtcctgtac
cgacctcgagcacagcacacgaggcacgcctatgagctactgctgtctttcatgcagagc
gcgcttggagatcaaccgagggacatcctctgcggggcttgtgatgaggtgttagtcgtg
ctaaagaatgacaaactgaaagatcttgaaaagaagaaagagattgagttgctgctgggg
caaatcccagatgagagattcgctctactagttaacttgggcaagaagataacggatttc
aacataagcgccacagcggaggggaacacggaaatcgatgagacatacggtatcaatgtg
cagttcgaggagtcctccgaggaggatgatgaggatgcttacggggaggtccgtgaagaa
gacaaggaagacggagaaggctctgaaaatgagagggagaaggagagtagcggagaggac
agcgatggagagggcaagaagaacgcaatacatgcgaatctgacagaggaacagtcgcag
aagcggcgagacgccgtactccatccgatggatattgacgcgtattggctgcagaggagg
ctctcgcgacacttcccagacgctatggtgtcgcaggccaaagcgagcgaagtcctgaag
gctttagcggaggcggccgacgacagggacctggagaacagactagttttgttgctcgga
tatgactgcttcgagtttgtcaagactctaaataaatacagacatatgattctttactgc
atacgactggcatcggctcagtctgacaacgagcgcgccgccatacgcgaggagatgtcg
cggcagccgcatctgcagaagatactggcgcagctggacacgggcaagggggacgatgag
acctcccaacaatcggaaataccccgcaagcggcacaaagcggaagcggacacgagtggg
ggcagcgcggtggggggcgctcgccgcgtgctgccgctggaggagctggtgttcgcggcc
ggcgcgcacttcatggccaacaagcggtgccagctgccgcctggctccttcaggaagcag
aggaagggctacgaagaggttcacgtgccggctttgaagccaaaacctttcgacgaaggc
gagaccctcgtggcgatagacaagctgcctaaatacgttcagcctgccttcgaggggttc
aagactttaaataggattcagagtcgcatatcgaaagccgccttggaatcggacgagaac
ctgttagtttgcgccccaaccggcgccggcaaaaccaacgtcgccctcctgtgcatactg
cgcgaggtcggcagacacgtgaacgacgacggcactgtcaacgtgcacgacttcaagatg
atatacgtggcgccgatgcgttctctcgtacaggagatggtgggcaacttcagcaagcgg
ctggctccgtacaacatgaaggtgtcagagctgaccggcgaccaccagctgacgagggag
cagatcgaggccacccagctgatcgtgtgcaccccggagaagtgggacatcatcaccagg
aagggcggcgagcgttccttcacgaacctggtccggctgatcatcattgacgagatccac
cttctccacgacgagcgcggccccgtgctcgaggcgctggtggcgcgcactctgcgcacc
agggagcagacgcaggaggaggtgcgtcttgttggtctgtccgccactttacccaactac
acagatgtggcggcgttcttgcgcgtgaaacccgaacacgggctgttttatttcgacaac
tcgttcagacccgtggccctggaacagcagtacataggagtgaccgagaagaaggcgctg
aaacggttccaagtgatgaatgacattgtttacgagaaggccatggagcacgccgggagg
aaccagatcctagtgttcgttcactcgcgaaaagagaccggtaagacagcgcgtgcgatt
cgtgacatgtgcttggaaaaagatacgctcggacagttcctgagggaaggctcggcgagc
atggaagtgctgagaactgaagctgaacaggtgaagaacccggaacttcgcgagttgctg
ccgtacggtttcgccattcaccacgccgggatgagccgagtcgacaggaccctggtcgag
gacttgtttgctgataggcatattcaggtgctggtatccacggcgacgctggcgtggggc
gtgaacctgccggcgcacacggtgatcgtgaagggcacgcaggtgtactcgccggagcgg
ggccgctgggccgagctgggcgcgctcgacgtgctgcagatgctgggcagggccggccgg
ccgcagtacgacgacaagggggaaggcatcctgataacgaaccactcggagctgcagtac
tacctgtcgctgctgaaccagcagctgcccatagagtcgcagctgatctccacgctgccg
gacatgctcaacgcggaggtggtgctcggctctgtgcagagcgtgcgcgacgccgtcacg
tggctcggctacacgtacctatacatcaggatgcttcgccaaccggctttgtacggcgtc
acgccggagaagttgcaagatgatccgcttttggagttgcacagagctgatctagtacat
actgctgcaagtttgctggacaaagccggcttaataaaatacgaacgcaaatccggtcac
ttccaaccgacggaactaggccggatcgcatcacacttctactgcacttacgagacaatg
cagtcttacaaccagctgttgaggccgacattgggcgagatagaattgttccgcgtgttc
tctctctcggctgagttcaaacacgtgaccgtgagggaggaggagaagctggagttgcac
aagctgatggagagggtacccataccaatcaaagagagcatagaagagccgtctgccaaa
atcaacgttctgttacaagcgtacatttcccagctgaagttggaggggttcgctttgatg
gcggacatggtgtatgtgacacagagcgctgcacggctcctcagagccatcttcgagatt
gttctgcacagaggctgggcccaactggtggacaagacgttggcgctgtgcaaaatggtg
gacagacgaatgtggcagtcgatgtcgccgctcaggcagttcaggaagatgccggaggag
gtaataaaaaaactcgagaagaagaacttcccgtgggagaaattatatgaactcggtccg
aacgagatcggagagctggtcagagctccgaaactcggcaagatgatacacaagcacatc
agacaattccccaaattggaactgtccacccacatccagccgatcaccaggtccactctt
cgtgtggagctcaccatcactcctgacttccagtgggatgagaaggtgcacggccaatcg
gaagcgttctggatcctggtggaagacgtggacagcgaagtcatactccatcatgagtac
ttcctcctcaaagagaagtacagcaaggacgaacaccttgtcaaactgtttgtgcccgtt
ttcgagccactgccgcctcagtgcttcctgagattagtctctgacagatggataggcgcc
gagacccaactgccggtgtcgttccgccacctcatcctccccgagaagaacctgcccccc
accgagctgctggacctccagccgctgcccatcaccgccctgaggaatcctaaatacgag
gagctgtacaacgagatattcccgcaattcaatcctgtgcaaacgcaggtattcaacgcc
gtatacaactcggacgataacgtcttcgtcggcgccccgtctggttctgggaaatctgtt
atcgctgaactagcgttactgaggctgctgagcgccagtgcgggcggcagggcggtgtat
gtgttgcccaaggacgcattggctgacattgtcttcgctgactggtatcacaagttcggt
gcccggttcaatcttaaggtagttcaactgaccggcgagacggccacagatcacaaacta
ttgaataaagggcaaataatcatcaccaccgctgagaaatgggacgtgttatctagaaga
tggaaagtgcgcaagagtgtacaaagcgtggctctgttcatagtggacgctttacaactg
ctgggcggcgaggaagggccggtgcttgaagttgtatgctcaagaatgcggtacatcgca
tcacagacgggcaagcctattcgcatcgtggctctgtccctcccgctggcggacgccagg
gacgtctcccaatggctcgggtgtaacgccaacgcctccttcaacttccaccccagcgta
cggcccctgcctctggagttgcacattcagggcttcaacatatcccacgcgggctcccgg
ctcgcggccatgacgaagccgatctacagcgccgtgtgccggcacgccggcggccggccg
tgcgccgtgttcgtgccgtcccgccggcacgcgcgcctgctggccgccgacctgctggcg
ctggccgccgcgcacgcccgcccggcgcgcttcctgcacgcgcgccccgagctggtggcg
ccactgctcaagcgggtccaggacaagatgttgaaagaaaccttgtcagccggcgttgcc
tacctccacgagggcgtcgagcagaacgaccggcgcgtggtgcagcaactagtggagtcc
ggggcggttcagctgtgtgtggtcgccgcggagctggcgtgggccttcgcggcccacgtc
cacactgttatagtggccgacacccatgtttacaacggcaaactacacgcgtacgagcaa
taccccatcactacggtactacaaatgttgggccgagcgtgtcgccccgtggaagacgac
cactcagtcgccgtgctgatgtgtgtggctcatcacaagacattcttcacgaagttgctg
aacgactgtctacccctggagagccacttagaccacagactacacgaccacatgaacgcg
gagattgtcacgaagaccatagagaacaaacaggatgccgtggactatctgacctggacc
ttcctctaccggagactgactcagaacccaaattattacaacctccaaggagtcactcat
agacacttatcagatcacctctccgagctggtggagaccaccctcacggacttggagcag
tccaagtgtatagccatagaagacgagatggacgtccagcctctgaacctgggcatgata
gcgtcatactactacatcaactatactacaattgaattgttcagcttatcactcaccagc
aagaccaagatccgtggtctgctggagatcatatcctcggcggcggagttctccgagctc
gtcatcaggcaccgtgaggagaacatcatcaaggccttggccgccaaagtgccccacaag
ccccaagcgccctctggcggcgtggtgaagtacaatgacccccacgtcaaagcccacgtg
ctgttacaagcccatctctccaggatgcagctgccggcggaactgcaggccgatacgcag
aaagtgctggtcaaggcgatccgactgatccaggcctgcgtggacgtggtgtcgtcctcc
ggctggctgtcgccggccgtggcggccatggagctggcccagatggtcacccaggctatg
tgggcgaaggactcgtacctgagacagctgccgcacttcactcaggagctggtgcagagg
tgtagcgagaagggcgtggagaccgtattcgatgttatggagctggaggacaacgccaga
gcgaaacttctgcagctgtcgccgagcgagatggcggacgtggcgcggtactgcaaccgg
tatcccaacgtggagctcacctatgaggtgaagaatccgcggcggctcagcgcgggcaag
tccattattgtcgaggtgtctctggagcgcgaggatgacgtagggcccgtcatcgcgccg
ttcctggcacagaaacgcgaggaaggctggtgggtggtcatcggcgagccgaaatccaac
agcttgctctccatcaagagagtctcgctagctcgctccgccaaggtccgcctggatttc
gtctgcggagcgcccggcaggcacacctacactctctacttcatgtcggacgcgtatctc
ggagctgatcaggagtataaattcaccgtggacgtgggtgaagctaattcagattctagc
ggagaagagtag

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