KEGG   Amyelois transitella (navel orangeworm): 106133327
Entry
106133327         CDS       T09957                                 
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106133327
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106133327
   03009 Ribosome biogenesis [BR:atra03009]
    106133327
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106133327
Spliceosome [BR:atra03041]
 Complex A
  U2 snRNP components
   U2 related factors
    106133327
 Complex B
    106133327
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    106133327
Ribosome biogenesis [BR:atra03009]
 Eukaryotic type
  90S particles
   Helicases
    106133327
SSDB
Motif
Pfam: OB_NTP_bind HA2_C WHD_HA2 Helicase_C DEAD AAA_22 AAA_19 nSTAND3 SRP54 Cas3-like_C_2 Flavi_DEAD AAA_25 T2SSE
Other DBs
NCBI-GeneID: 106133327
NCBI-ProteinID: XP_060809371
LinkDB
Position
31:join(1285391..1285440,1286214..1286329,1287421..1287549,1288131..1288283,1289672..1290227,1290757..1290895,1291414..1291589,1293386..1293522,1295986..1296123,1297158..1297280,1297926..1298025,1298917..1299007,1299452..1299614,1300143..1300270)
AA seq 732 aa
MSKRRIEVLDPFIKKKREEKAAAAAKSGGSGESSAVTSASMVPASTGTPGINSYTGLPHS
QRYHELLRRRLGLPVWEYKSDFMRLLDTHQCVVLVGETGSGKTTQIPQWSVEFAAITAGK
SKGVACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGMLLRE
AMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYF
DNAPLMNVPGRTHPVEIFYTPQPERDYLEAAIRTVVQIHICEEIAGDILLFLTGQEEIED
ACKRIKREIDNLGPDAGELKCIPLYSTLPPNLQQRIFEPAPPNRANGAIGRKVVVSTNIA
ETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRL
YTEKAYKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLN
YLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPN
EARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQL
SRIMDRFNLKRTSTEFTSKDYYINIRKALVDGFFMQVAHLERTGYYLTVKDNQVVQLHPS
TCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELNNFPQCEARRQLELLQ
ARLDSKPYQEGF
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgtctaaacggaggattgaagtattggatccttttatcaagaagaaacgggaggagaaa
gcggcagcggcagctaagtccggcggcagcggtgagtcgtcagctgtaacaagtgccagt
atggttcccgccagtactggcactccggggatcaactcttatacaggcttgcctcattca
caacgctatcatgagctgctgcgcaggagactgggcttgcccgtttgggagtacaagagc
gatttcatgagactgctggatacgcaccagtgtgtcgtgttagtcggagagacagggtca
ggcaaaacaacgcagattcctcaatggtccgtcgagtttgccgctataactgccggcaag
tccaaaggcgttgcctgcacccagcccaggcgtgtggcggccatgtcagtggctcagagg
gtcgctgaagaaatggacgtcgctttgggtcaacaagtcggctacagcatccgtttcgag
gactgctccggaccgcagaccgtattgaaatacatgacagacggtatgctgcttcgcgag
gccatgtcagatcctatgctggaacagtacagggtgatactgctggacgaggcccacgag
aggacgttggccactgacatactgatgggtgtgctgaaagaggttataaaacagcggtcc
gatttgaaattggtcatcatgtctgcaacattggacgctggcaagttccaacagtatttt
gataacgcaccgctgatgaatgtgccgggcagaacgcatccggtggagattttttataca
ccgcaaccggagagggattatttggaagcggctataaggacggttgttcagattcacata
tgcgaagagatagccggtgatatattgctgtttttgaccggtcaagaggagattgaggat
gcttgtaagagaatcaaaagggagattgataatctggggcctgatgccggggagttgaag
tgtatacctctgtattccacactgccgcctaatctacagcagagaatattcgaaccggca
ccaccgaatcgcgctaacggcgccatcggccgcaaagtggtcgtctcgaccaacatagcg
gagacatcgttgacgatagacggtgttgtgttcgtgattgacccgggattcgctaagcag
aaggtgtacaacccgcgcatccgcgtggagtcgctgctggtgtcgcccatcagcaaggcg
tctgcgcagcagcgcgccggccgcgcgggccgcacgcgccccggcaagtgtttccgtctc
tatacggagaaggcgtacaagaacgagatgcaagacaacacttatccggagatattgaga
tcaaacttaggatctgtagttttgcagttgaaaaagctgggcattgatgatttggtgcat
ttcgacttcatggacccgcccgctcccgagacgctaatgagggcattggagctgctgaac
tacctcgccgcacttgacgacgacggtaacctaactgatctgggcgctgtcatggcggag
ttcccgctggaccctcagctggccaagatgttgatagccagctgtaaccacaactgttcc
aatgagatactcagcataacagctatgttgtcagtgccacaatgcttcgtgcgcccgaac
gaagccaggaaagcggcggacgaagcgaaaatgagattcgctcacatagacggcgaccac
ctgactctgctcaacgtgtatcacgctttcaaacagaacatggaggaccctcactggtgt
tacgacaacttcatcaattacagatcgctgaagtccggtgataacgtgagacagcaactc
agtagaataatggacagattcaatttaaaacggaccagtacagagttcactagcaaagat
tactacattaatataaggaaagcactcgtcgatggattctttatgcaggtggcgcacctg
gaacgaaccggttactatttaacagtgaaagacaaccaagttgtgcaactacacccgtcc
acctgccttgaccacaagccggactgggtgatatacaatgagtttgttctcaccacaaag
aattatattaggaccgtcactgatattaaaccggaatggctcctaaaaatagcgccacaa
tattacgaactgaacaacttcccgcagtgcgaggcgcggcggcagctggaactgctccag
gccaggctcgactccaagccctatcaggagggattctag

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