KEGG T09957: 106133443

Amyelois transitella (navel orangeworm): 106133443

Entry

106133443         CDS       T09957

Name

(RefSeq) double-stranded RNA-binding protein Staufen homolog 2 isoform X1

K17597

double-stranded RNA-binding protein Staufen

Organism

atra Amyelois transitella (navel orangeworm)

Brite

KEGG Orthology (KO) [BR:atra00001]
09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:atra01009]
    106133443
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106133443
Protein phosphatases and associated proteins [BR:atra01009]
Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     106133443
Messenger RNA biogenesis [BR:atra03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     106133443
   mRNA cycle factors
    Stress granule specific factors
     106133443

SSDB

Motif

Pfam:

dsrm Staufen_C

Other DBs

NCBI-GeneID:

106133443

NCBI-ProteinID:

XP_060804037

LinkDB

Position

3:complement(join(3511335..3511398,3511713..3511876,3512076..3512185,3512889..3512973,3513543..3513673,3514230..3514458,3515110..3515310,3515707..3515846,3516796..3516951,3517435..3517614,3518722..3518848,3519286..3519387,3519701..3519858,3520497..3520556,3521336..3521447,3522022..3522169,3524364..3524506))

AA seq 769 aa
MMHHPNMHHQPMSGHPPQHMGGHQGMPGHHQMPPHQMHRENRHVTLTRVPLGASQGGGLG
ALGGAMDVPHHAPALRPPQPIRAMAHHPPQQHHYVPPQQMKPMRRPYTTYGPANAPVMPP
MYPQPAPIQPQQPQGLGKSQTSPVLAKSKLTSDFVASPPAPAPAPPASAREEPPAPADKE
AARPAPAANSKEKTPMCLVNELARYNKIKHQYRLTSETGPAHKKIFTVTLRLGDTEEYTA
EGTSIKRAQHAAASAALTGTRFPPPPPRAEPAHSAAHPHHRHSGTVMPTVELNALAMKLC
QPAVYTSVPPVAAPRPPRARAAPLYRVPAPGFVPAGYQRMMTPGLLYRVRVCVGGRAWLG
EGATPQAARHDAAARALHELRHPPAAPPAPAAPDTGDTKSESEDPLNSEVKSPVSLVHEL
ALKRNLSVVFTVKSERGPPHMRVFVTACTVGDMETEGEGNGKKVSKRRAAEKMLEEMKGR
WPPTLLRPRVTHEKRKPQPTKKKPRNLIKEGGAGCAGGAAGGADNPISRLAVARHAARAR
SPQYRVLEERGAARRREFLVQCDAPPHAATGLGPNKKTAKRRAAHNVLLAMEMSANSTET
ATSPTANNSQEAAVNGSPDTNKNADPKRKESEGGGGDARQPVPGVLLMDYHQRGAQNGVT
ETTPGNGSSPGAKDQLMYLSQLLGFTVQFSDFPKRNHGEYLSLVSLSTEPPVMCHGGGAS
TQLSHEQCSLAALRALALMGLDAAPQPLQIPNASATPSKAKAIPNGIAE

NT seq 2310 nt +upstreamnt +downstreamnt
atgatgcatcacccgaacatgcatcatcagccgatgtcggggcacccgccgcagcacatg
gggggccaccaaggaatgcctggccatcatcaaatgccgccccatcaaatgcatagagaa
aacaggcacgtaacgctaactagggtgccgctgggcgcgtcgcagggcggcgggctgggc
gcgctgggcggcgccatggacgtgccgcaccacgcgcccgcgctgcgcccgccgcagccc
atccgcgccatggcccaccatccgccgcagcaacaccactatgtaccaccgcaacagatg
aagccgatgcggcggccctacacgacctatggacctgccaacgcgcctgtaatgcctccc
atgtatccgcagccggcgcccatacagccacagcagccgcaaggtctgggcaaatcgcaa
acgtctccagtattggcgaagtcgaagcttacatctgattttgtagcgtcgcccccggcc
cccgcgcccgcgccgccggccagcgcgcgggaggagcccccggcgccggccgacaaggag
gcggctcggccggcgcccgccgccaacagtaaagagaagacgcccatgtgcctggtcaac
gagctggccaggtacaataagattaagcaccaataccgcctcacatcagaaacgggaccc
gctcacaagaaaatattcacagtaacactccgattgggtgatactgaagaatacacagca
gagggtacgtccataaagcgagcacagcacgcggcggcgagcgcggcgctgacgggcacc
cgcttcccgccgccgccgccccgcgccgagcccgcgcactccgccgcgcatccccaccac
aggcactcaggtacagtgatgccgacggtggagctgaacgcgctggccatgaagctgtgc
cagccggccgtgtacacgtcggtgccgcccgtggccgcgccgcgcccgccgcgcgcgcgc
gccgcgccgctctaccgcgtgcccgcgcccgggttcgtgcccgccgggtaccagcggatg
atgacgccggggctgttgtaccgcgtgcgcgtgtgcgtgggcgggcgcgcgtggctgggc
gagggcgccacgccgcaggccgcgcgccacgacgcggccgcgcgcgcgctgcacgagctg
cggcacccgcccgccgcgccgcccgcgcccgccgcccccgacactggtgacaccaagtcc
gagagcgaagacccgttgaactcggaagttaagtcgcccgtgtcgctggtacacgaactg
gcgctgaagcggaacctctccgtcgtgttcacggtcaagagcgagcggggcccgccacac
atgagagtattcgtaacggcgtgtacagtgggcgacatggagactgagggcgagggcaac
ggcaagaaggtgtcaaagcggcgcgccgccgagaagatgttggaggagatgaagggtcgc
tggccgcccactctgctgcggccgcgggtcacgcacgagaagagaaaaccgcaacctacc
aagaagaaacccaggaacttgataaaggagggcggcgctgggtgcgctggcggcgcggcg
ggcggcgcggacaacccgatctcgcggctggcggtggcgcggcacgcggcgcgcgcgcgc
tcgccgcagtaccgcgtgctggaggagcgcggcgcggcgcggcggcgcgagttcctggtg
cagtgcgacgcgccgccgcacgccgccaccggcctcgggcccaacaagaagaccgccaag
cggcgcgccgcgcacaacgttctgctcgccatggaaatgagtgctaattcgacagagact
gccacgtcgccgactgccaacaatagccaggaagccgcagtcaatggctcgccagataca
aataagaacgccgatcctaaacgaaaggagtcggaaggcggcggtggcgacgctcggcag
ccagtaccgggcgtattgctcatggactaccaccagcgaggcgcgcagaacggtgttacc
gaaacaactccgggcaacggttcgtctccgggcgcgaaggaccaactcatgtacttgtcg
cagttgctgggtttcacggttcagttctcagacttccccaagcgcaaccacggcgagtac
ctgtctctggtgtcgctgtcgacggagccgccggtgatgtgccacggcggcggcgcctcc
acgcagctgtcgcacgagcagtgctcgctcgccgcgctgcgggcgctggcgctcatgggg
ctcgacgccgcgccgcaacccttgcagatcccaaacgcgagcgcgacgcccagcaaagca
aaagcgatccccaacggcatcgccgagtga

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