Amyelois transitella (navel orangeworm): 106133721
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Entry
106133721 CDS
T09957
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106133721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106133721
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
106133721
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
106133721
NCBI-ProteinID:
XP_013188993
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Position
28:complement(join(874777..875024,876194..876284,876891..877002,877509..877750))
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AA seq
230 aa
AA seq
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MAGLAAVQGGPGNKMWPARPGMQHQNGQNNANTLTLNRTINLYPLTNYTFGTKEPLFEKD
ASVPARFQRMREEFVKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDE
IEGLKRLLTETLGRQDGVQQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLV
QLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFVYM
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtttggcagcagtccagggaggtccgggtaacaaaatgtggccagcgcgtccg
ggcatgcagcatcagaatggccaaaataacgccaatactttgactttaaataggacaata
aatctttatcctttaactaattatacgttcgggacaaaggagccgctgtttgagaaagat
gcatcagtgcctgccaggtttcaaaggatgcgggaggaatttgtcaaaattggaatgaga
aggtctgttgaaggtgtcctgctggttcatgagcatggattacctcacgtgctgctcctc
cagctagggacggcattcttcaagctgcctggaggagaacttaacccaggagaggatgag
attgaaggtctcaagaggctactcacggagacactgggcagacaggacggtgttcaacag
gagtggctcattgaggataccataggcaactggtggcgcccgaacttcgaacccccccaa
tacccctacattccaccgcacattaccaaaccgaaagagcacaagcgcctcttcttagtg
caacttcaagacagagccttattcgcagtgcccaagaactacaaattggttgccgcgccc
ctatttgagttgtatgataacgcgcagggctacggaccaatcatatcttcgctgtcacag
agtttgtgcagattcaactttgtctatatgtaa
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