Amyelois transitella (navel orangeworm): 106133723
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Entry
106133723 CDS
T09957
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03018
RNA degradation
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106133723
09123 Folding, sorting and degradation
03018 RNA degradation
106133723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106133723
03041 Spliceosome [BR:
atra03041
]
106133723
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106133723
mRNA degradation factors
5'-3' decay
Lsm complex
106133723
Spliceosome [BR:
atra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106133723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
106133723
NCBI-ProteinID:
XP_013188995
LinkDB
All DBs
Position
28:1512780..1513199
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AA seq
139 aa
AA seq
DB search
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEETQVKARGRSEMSKGRGGGQNMRSGRGGARGAFGNRGRP
APLARGGGNTGRPQNKNKK
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctctttcgctactacgaacagctcaaaaccacccaatgcttgtggaattaaaa
aatggcgagacctacaacggtcaccttgttagttgcgacaattggatgaatataaatctc
agagaagtgatttgcacatcaagagacggtgataagttttggaggatgcccgagtgttat
atccggggtagtaccatcaagtatttgaggattccggatgaagttatcgatatggttaaa
gaagagactcaagttaaagctagaggtcgcagtgaaatgtctaaaggacgaggtggcggt
cagaatatgcggtctggtcgaggtggagctagaggcgcgttcggaaaccgaggcagaccg
gcgccgttggcaagaggaggcgggaacactggaagaccacagaataaaaataaaaagtga
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