KEGG   Amyelois transitella (navel orangeworm): 106133831
Entry
106133831         CDS       T09957                                 
Name
(RefSeq) exosome component 10
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106133831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106133831
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     106133831
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT PAM2
Other DBs
NCBI-GeneID: 106133831
NCBI-ProteinID: XP_060809782
LinkDB
Position
Z:complement(join(9872999..9873385,9874170..9874247,9875419..9875527,9876470..9876597,9877678..9877816,9879042..9879190,9879673..9879856,9880315..9880478,9881260..9881381,9881885..9882102,9882439..9882611,9883054..9883222,9885916..9886097,9887867..9887929))
AA seq 754 aa
MHSDLNPEAPEFYPHLASVTKGGYSTMNKTIKSSNQLPAGASHEMFKTFTSFNIVKCKLS
ENVVTQSNQIVAKELPTVKLKINDLEYNTEKIIDVNDSMLDRVNINIDTESGVNKPNQLM
VARNVSSWNNGPIIAKIQMGSTTFIGAKNIPRPQLSFKDAVDNSESLWVPKISDKPNSIK
SLALSIIYSEDGEAIGYEHPYRVELDLYHPPAEFIDPDPSPPKFPPSLEETKYTYVETEE
QLDALVKHLEGVKEMAVDVEHHSYRTYQGITCLIQITTTEGGDFIIDVIALREHIHKLNL
IFTNPKKLKVFHGAESDVVWLQRDFGVYIVGLFDTHQAARTLKMSALALKNLLLKYCNVN
TDKRYQLADWRIRPLPDELVEYARMDTHYLLYIWRMMKADLLATAGGNPRLLLAVFEQAR
QICGTTYNKKVVHEDSHMPLYVRSKKSFNTQQMAALKMLYKWRDAQARLLDESTTYLLPN
HMMLALSETLPREVQGVHACCNPMPPFIKQNLITVHRMILSCRELPVEPQLYQMPSSIRT
MASAQQHLAAAYNVHDLAHMPEFTDDHRTNFDVTEYLNSEPPMQPEVKAFKTTYKTYCGI
VSDLNVDAKLFIPPYDRYRKYRSLAQMEEMKEFKDKEAKIAALGKGDELIKAEVLAKLQQ
AKAKIEDDGKIAIKEATEIVIIDDEDTKAKRKRKISIDKTERNVTKSDIKKGNKKSAGKN
NPEPFMYKNANYRKFYSENNTEKTRPKMKFKKHK
NT seq 2265 nt   +upstreamnt  +downstreamnt
atgcattccgatttaaatccagaggcacctgaattttatccccatttggcatcagtgacg
aagggtggatattccaccatgaacaaaacaataaaatcttcaaaccagctgccggcgggt
gcttcccacgagatgttcaaaacatttacaagtttcaacattgtcaaatgcaagttaagt
gaaaatgttgttacacaatcaaaccaaatagttgcaaaggagttgccaactgtgaagttg
aaaatcaatgacttagagtataacacagagaaaataatagacgtgaatgactctatgctg
gaccgagtgaacatcaacattgacactgagagtggcgtgaacaagcccaaccaattgatg
gtcgcgaggaatgtgtcctcgtggaacaatggacctatcatagctaaaatacagatgggt
tccacgacttttattggtgccaaaaatattcctcgtccacagctatcattcaaagatgcc
gtggacaactccgagagtctatgggtgccaaaaatatctgacaaaccaaacagcattaaa
tcactcgctctcagtatcatttatagtgaggatggtgaagctattggctacgaacaccca
tatagagtggaactggacttgtaccatccaccggcggagtttattgaccccgacccgtcg
ccgccaaagttccctccatcgttggaagaaaccaagtacacatatgtagaaactgaggaa
caactggatgcgctggttaagcatttggagggcgtgaaagagatggctgtcgatgtggag
caccattcgtacaggacttatcaaggaataacatgtcttattcaaatcacgacgaccgaa
ggaggcgattttattattgacgttatagctttaagggaacatatacacaaattgaactta
atctttaccaacccgaaaaagttaaaagttttccatggcgcggaatccgacgtggtgtgg
ctgcaacgagacttcggcgtgtacattgtcggtttgttcgacactcatcaggccgcccgc
acgctcaaaatgtcggcgttagcattgaagaacctactgctcaaatactgcaacgtgaac
actgataaacggtaccaactagcggactggcgcattaggcctctgcccgatgaattggtc
gagtacgctcgtatggacacacactatctgctgtacatatggcgaatgatgaaagccgat
ttactcgctacagccggcggcaacccgaggcttctactcgccgtgtttgaacaagcccga
cagatatgtggcacgacatacaataagaaggtagtgcacgaagacagccacatgccgctg
tacgttcgctcgaagaagtccttcaacacccaacagatggcggcactcaagatgctgtac
aagtggagagatgcgcaggcgcggctcctcgacgaaagtaccacatatctgctccccaac
cacatgatgttggcactgtcagagacactccccagggaggtgcagggagtccacgcgtgc
tgtaacccgatgccgcccttcatcaagcagaaccttatcacagtccacaggatgatactg
tcgtgtcgcgaactacccgtggagccccaactgtatcagatgccgagcagcatccgcacc
atggccagcgcccagcaacacctggcggccgcctacaatgtgcacgacctcgctcacatg
ccggaattcactgacgatcatcgcacaaatttcgacgtgacagagtacctaaacagtgag
ccgcccatgcagccggaagtgaaggcgttcaagacgacgtacaaaacgtattgtggaata
gtgtcggatttgaacgtggatgcgaaattattcattccgccatacgacagatacagaaaa
tatcgttccctagctcagatggaagaaatgaaggaatttaaagacaaagaagcgaaaata
gccgctttaggaaaaggcgacgaattaattaaagcagaggtgctagctaagctgcaacag
gctaaagcgaaaatcgaagacgatggcaaaatagcaattaaagaggccacagaaatcgta
atcattgatgacgaagacacgaaagcaaaacgcaaacgaaaaatatcaatagacaagacg
gagcgcaatgtcacgaagagtgatatcaaaaaaggcaataagaaatctgcgggcaaaaat
aatccggaacctttcatgtataagaacgcgaactacagaaagttctacagcgaaaataac
acggaaaaaacgcgacctaaaatgaagtttaaaaaacataaatag

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