Amyelois transitella (navel orangeworm): 106133976
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Entry
106133976 CDS
T09957
Name
(RefSeq) nuclear pore complex protein Nup153 isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
atra03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106133976
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106133976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106133976
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106133976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_RanBP
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
106133976
NCBI-ProteinID:
XP_013189357
LinkDB
All DBs
Position
Z:complement(join(10662124..10662312,10662574..10665460,10665659..10665818,10666268..10666600,10666784..10667057,10667221..10667442,10670593..10670646))
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AA seq
1372 aa
AA seq
DB search
MSGVSRKRSRPSAEDANNSFVMSVTSKVTGLLPATITKWFSGSSQTNSNGSAPTAEVTDS
SSEDEPEMASPITQPPQKRTRFNTPNHYNTSEANCVTFNNEATEPSFNTGLGQSPLRKFP
RDPNLVSTPFRHPNTSNEEAPADRSERDTNMSPSFSYSTMGPPVVNKRKSLFNIPTNKDE
SIKAKPIHNTIVDAKQPCFKPSLLVSPFYPSRTTYGGASSQYINRPNIKQRKGAYVNELN
SNDSTAMSQSAKRVMDLLEDYSSPIMEAKRIPHYNRSDSIASSSPSSSNSNKSISYKTTE
LHAPNIASILRLKQKSRLMNTTNAARQIIASHSSACHYSPYTLNPNRSSQVDVESRSKST
TTDALPSSGIDKETTATLPPVSLPTVVLQISKDNLPKFTFGTNLPNPEASSTPKPINKMD
KPTPTVSESPVKPAEPKTIISKPEPSISKPVVDIGSNFKFSSPAKISFTVASSQATAAPS
KYTFGSPERNIDKGNKETDKSVCIVGEKDVQMEVSKPKDWECSDCWVKNKPDVDKCVCCG
GKKPIEGKKIPKCSICKLKDSEPQSNKCTTCLSKAWTSGSNLNNTSLVNSVKSSKWKCND
CWAENEEDKEKCACCGWKNPNKSSQSSSAAPIKAVADSDWTCADCWIKNKSSVEKCAACG
GAKPGSKQNASALPASLLGSNSKPLVSSQSNKWECTSCLVRNDNDKVKCVCCESERPGAE
KNTIKTTFNFGTVNNTFKFGIDPKVQEANLAKAPAIKPLDTKVSESETNNNVLSKAPPTF
SFGIPAKKPEDQIDSVKNITPAPVVDSPLVVQKTSALTVPDFTAKKSEIKQDDEKPQEVP
KVEFSLPAPTSKPESKLEPKPFGAMISASPLVSTPNITLYSPPTTTPCLLNPIPSVEKKD
TPTAQLPFQLGSTTTSAPSPPQNKFVFSGAGLKPAVNLFSKPASPPSTVTLSFASPVQSQ
TTTPAPSLFQKPEQTGTPAMSLFQKSDPSTNSALSMFQKPAATTTAAAPSVASTAPVFSF
GTGNKPASTFSFGSTQPANVNEPAANNSFKFFGSTPDKNTSSNKFNLGGVTTLGASNSLT
SGNILGHGNGLSSGNTLGTSSLPGANLNSGNNEIPVHNNQNDLKPANSIQSPTSNIFGAP
AQKENIWSQSSNASNNLFNANTANSLQKPGAFTFGASSTPFGAQANNPTPASTPFGAQPS
NPAPAPVFGSNAQPNLFGMGNQNANSTRSLFGTSSSAPSQPNLFGAPQPTSTPNAMGMFG
SPSTGAANTFGAPSQTLPSFDSSAITPSPAPAFNFGAPPSQSPVVFGFGQQQQQQQPQQP
PVYSFGASPNAPQLGMGAGPQVQFNMGSAPPNSSTPPAMRRVRKAVRRNTPR
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagtttcaaggaaaagatctcggccttcggctgaagacgctaataattcgttt
gtcatgtctgtaacgtctaaagtgacgggcctgttgccggcgacgattaccaaatggttc
agcgggtcgagccagaccaacagcaatggctccgcacccactgcggaggtcacagactcc
tcgtctgaggacgaaccagagatggctagccccatcacgcagccaccacagaaacgaaca
agattcaacactccaaatcattacaacaccagtgaggcaaactgtgtgactttcaataat
gaggcaacagagccatcattcaacactgggctaggacaatcccctcttagaaagtttcca
agagatccgaacttagtatcaactcctttccggcatccaaacacttcaaatgaagaagct
ccagctgacaggagtgaacgggacaccaatatgtcaccttcattctcatattcaactatg
ggcccccctgtggtgaacaagcggaaatcattatttaacataccaacaaataaggatgaa
tccataaaggcaaagccaattcacaacaccattgtggatgcaaaacagccatgcttcaaa
cccagtcttttggtatctcctttttaccccagcagaaccacatatggtggcgcttcaagt
cagtatataaaccgaccaaatataaagcaaaggaaaggggcctatgtaaatgaattgaat
agcaatgacagtacggctatgagccaatcagccaaacgtgtaatggaccttctggaggac
tactcgtcgcctatcatggaagcaaagaggataccacattacaatagaagtgattctata
gcaagtagctcgccgtcatcgagcaacagcaacaaatctatatcttacaaaacgacagag
ttgcatgcaccgaacatcgcgtctattctgcgattgaaacagaagtcgcgtctcatgaac
acgacgaacgcggcgcgtcaaatcatagcgtcgcatagtagtgcgtgccactattctccc
tacacattaaatccaaatagaagttcacaagttgatgttgaatcacggtccaagagcacc
acaactgatgcgctgccttcaagtggaattgacaaagaaaccacggctacattgccacca
gtgagcctgccgacagtggttctgcaaataagcaaagacaatttacctaaattcacattt
ggcacaaacttgccgaatccagaagcttcctctactccgaaaccaatcaacaaaatggac
aaacccactcctactgtttccgaatctcctgttaagcctgcggaaccaaaaacgataata
agcaaaccggaaccttcaataagtaagcctgtagtagacattggtagtaatttcaagttt
tcctctcctgccaagatatcttttacagtcgcgtcttctcaagctacggctgctccctct
aaatacactttcggtagtcccgagcgcaatatagacaaaggaaataaggaaactgacaaa
tctgtttgtattgtaggtgaaaaagatgtacagatggaagtctccaagcctaaggattgg
gaatgttccgattgttgggttaagaataagccagatgttgataaatgtgtgtgttgcggt
ggcaagaagcccattgaaggcaaaaagattcctaaatgctccatttgcaagttaaaggat
agtgaaccacaaagcaataagtgcacaacttgcctaagcaaagcatggactagtggctcc
aatttgaacaacacatctctggttaactcagtgaaatcttcaaaatggaagtgcaatgac
tgttgggcagaaaatgaagaggataaagagaaatgtgcttgctgtgggtggaaaaatcct
aataagagttctcagagctcctcagcagctcctataaaggcagttgcagatagtgactgg
acctgtgctgattgctggatcaaaaacaaaagcagcgtagagaaatgtgcggcttgcggc
ggagccaaaccaggctccaagcagaatgcgtccgcattaccagcaagtctacttggcagt
aattccaagcctcttgtatcatcacaaagtaacaaatgggagtgcacgagttgcctcgtc
aggaacgataatgacaaagtgaagtgtgtttgttgtgaatctgaaaggcctggagcagaa
aagaacacaatcaagactacattcaattttggtacagttaataatacatttaaattcgga
attgatcctaaagtccaagaagctaatttggccaaagcgccagcgataaaaccattggac
accaaagtttcggaatcagagactaataataatgtattgtcaaaggctcctccgacattt
tcgtttggaatacctgccaaaaagccagaagatcaaatagacagtgtaaaaaatataact
ccagcacctgttgttgattctccacttgttgtacaaaagacttcagcacttacagtccct
gactttactgcgaagaaatctgaaataaaacaagacgatgaaaaaccacaggaggtacca
aaagtagaattttctctcccagctccaacatcgaagccagaatctaagctagaaccaaag
ccgtttggcgccatgataagtgcttctcctttggtttcaacaccaaatattacgttgtat
tctccgcccactacaacgccttgtctactgaatcctattccaagtgtggaaaagaaagac
acaccaaccgcacagttgcctttccagttgggctctactactaccagtgctccgagtcca
ccccaaaacaagtttgtgttctcgggagcaggcctgaaacccgcagtcaatttgtttagt
aaaccggcttcaccgccgtctactgtcactttgtcgttcgcatctcccgttcagagtcag
accacgacgcctgcaccgtctctcttccaaaaaccggaacaaactggcaccccagctatg
tcattattccagaagagtgatccaagcacaaattctgccctctctatgttccaaaagcca
gcagctacgacaacggccgccgcgccatctgtcgctagcacggccccagtattcagtttt
ggtaccggcaataagccagcatctactttcagttttggaagtactcaaccagctaatgtg
aatgagccagcagcaaataattcgttcaaatttttcgggtcgacaccagacaaaaacact
agctccaacaagttcaacttaggtggagtaacgactctcggtgccagcaattctttgaca
tctggaaatattttgggccatggcaatgggttatcgtcaggaaatactttgggaacttca
agtttaccaggagcgaaccttaatagcggaaataatgaaataccggttcacaataatcaa
aatgatttgaagccggcgaatagcatacaatctccaacatcaaatatattcggggcgccc
gctcaaaaggagaatatatggtcgcagtctagcaacgcgtcgaataatttattcaatgcc
aacactgcgaatagtttacagaagccaggagcgtttacattcggtgcgtcgagcacgcct
ttcggtgcgcaggcgaataatcccacgcctgcgagcacgccgttcggtgcgcagccgagt
aaccctgcgccggcaccagtgttcggcagtaacgcgcagccaaacttattcgggatggga
aatcagaatgcgaatagtacgcgatctttgttcggcacttcgagttcggctccaagtcag
ccgaatttattcggggcgccgcagccgacgagcacgccgaatgcgatgggaatgttcggc
tctccgtcgacgggtgcggccaacactttcggcgcgccgagccagacgttgccgtcgttt
gactcgtcggcgatcacgccgtctcccgcgcccgcgttcaacttcggagcgccgccgtca
caatcgccagtcgtcttcgggtttggccagcaacaacaacaacagcaaccacagcagcct
ccagtgtacagtttcggcgcgtcaccaaatgccccccaactgggcatgggggctggccca
caagtgcagttcaacatgggctcagcgccccccaatagttcaacaccccccgccatgcgc
cgcgtccgcaaagcagtccgcaggaacaccccccgatga
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