KEGG T09957: 106134194

Amyelois transitella (navel orangeworm): 106134194

Entry

106134194         CDS       T09957

Name

(RefSeq) ATP-dependent RNA helicase Ddx1

K13177

ATP-dependent RNA helicase DDX1 [EC:5.6.2.7]

Organism

atra Amyelois transitella (navel orangeworm)

Brite

KEGG Orthology (KO) [BR:atra00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106134194
   03016 Transfer RNA biogenesis [BR:atra03016]
    106134194
Enzymes [BR:atra01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     106134194
Spliceosome [BR:atra03041]
Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    106134194
Transfer RNA biogenesis [BR:atra03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    106134194

SSDB

Motif

Pfam:

DEAD Helicase_C SPRY ResIII ERCC3_RAD25_C CMS1 PGK

Other DBs

NCBI-GeneID:

106134194

NCBI-ProteinID:

XP_013189635

LinkDB

Position

22:complement(join(4145440..4145544,4145999..4146133,4146886..4146993,4147202..4147317,4147635..4147849,4148210..4148347,4148729..4148853,4149439..4149626,4150058..4150247,4150477..4150608,4150995..4151161,4151607..4151724,4151803..4152252))

AA seq 728 aa
MTAFEEFGVLPELGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDIQEGKTSKVLQTTSSEWTMSFFDRTDALAVTPDGLRCQSRDAQGWHGCRA
TKGVHTKGAYYYEATVTDEGLCRVGWSTQAARLDLGTDRLGFGFGGTGKKSNAKQFDDYG
SAFGMNDVIGCLLNLNNGEIRYTKNGEDLGVAFKLDQSRRADCYFPAVVLKNAEMSFNFG
AMPFKYPPSGEYIALKQAPKEFVKNNVVAAGAIAESKPVNNAPQAIIIEPSRELAEQTCN
QITKFKKYLENPKVRELLVVGGVNVKDQINQLNAGIDIVVGTPGRLEDLIQGGYLALTHC
RFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFEVKKMAEKLMH
FPTWVDLKGEDAVPDTVHHVVVMVDPQKDRSWETLRRHVQTDSVHAKDNIRSGNTTPETL
SEAVKILKGEYCLRAIREHKMDRAIIFCRTKLDCDNLERYMKSYGNEFPCVCLHGDRKPQ
ERKANLEKFKQSQVNFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERM
GLAISLVSSVPEKVWYHGEWCSSRGRNCWNTNLIDDRPKGCCMWYNEPQYLADIEDHLNV
TIQQIESDMKVPSNEFDGKVVYGEKRKQIGSGYQDHVSQMAPVVRSLQELESQAQLYYLK
MHHNVTIA

NT seq 2187 nt +upstreamnt +downstreamnt
atgactgcatttgaagaattcggcgttttgccggaactaggaaaagctatcgaggagatg
gactggacccttcctacggacgtccaagctgaagctattcctcttatccttggtggagga
gatgtacttatggctgctgagacaggcagtggaaagactggtgctttctgtctgccaata
ttacaaatagtttgggaaacattgaaggatatacaagaagggaaaacaagtaaagtttta
cagacaacttcttcagagtggaccatgtcattttttgatcgaactgatgcgttggctgtt
acgccggatggtttgcgctgccagtcccgtgacgcccagggctggcatggttgccgcgcc
actaaaggagttcatacaaaaggagcctattattatgaggcaacagtcaccgatgagggg
ctatgtcgtgtgggatggtccacacaagctgcaagactagatctgggcactgatagactg
ggatttggttttggtggcacaggaaagaagtcaaacgccaagcagtttgatgattatggg
agtgctttcggaatgaatgatgttattggttgcctcctgaatttgaacaatggtgaaata
agatacacaaaaaatggagaagatcttggtgtggcattcaaattggatcagtcaagaagg
gccgactgctacttcccggctgttgtgctgaagaatgctgaaatgagcttcaactttgga
gcaatgcctttcaagtacccaccatcaggggaatatatagcattgaagcaagcaccaaaa
gagtttgtgaaaaacaatgtagtggcagccggcgcaatagctgaaagtaaacctgtcaac
aatgccccacaggctattatcattgagccctcccgcgagttagctgaacaaacttgcaac
caaatcacaaaattcaagaagtatttagagaacccgaaagttcgggaactgcttgttgtc
ggaggagtcaacgtcaaggatcagatcaatcaactcaatgctggtatcgacatagttgtg
ggcactccaggccgacttgaggatctcattcaaggaggttacctggccctcacccactgc
cgtttcttcgttctggatgaagcggacggtcttctcaaggcaggttacggggagctgatc
gagagactccaccggcagataccgaagatcacgtctgatggccgccggctgcagatggtg
gtttgttcagccacattgcacgcgttcgaggtcaagaagatggcggagaaactgatgcac
ttcccgacgtgggtggatctgaagggcgaagacgcggtccccgatacggtgcaccacgtc
gtggtcatggtggacccgcagaaggacaggagttgggagactctgcgcaggcatgtgcaa
acagacagcgtgcacgccaaagacaatatccgtagtggcaacaccacgccggaaacactg
tcagaagccgtgaagatactcaaaggagaatactgtctgcgagccatcagggaacacaaa
atggacagggcgatcatcttctgtcgcacaaaactcgactgcgataacttggaacgctac
atgaagtcgtacggcaacgagttcccgtgcgtctgcctgcacggggaccgcaagccacag
gagcgaaaggcgaacttggagaagttcaagcagagccaggtcaacttcctcatttgtacc
gatgtcgccgctagaggaattgacatttcgggactacctttcatgatcaacatcactctt
cccgatgagaagtctaactacgtgcatagaatcggccgtgtcggtcgcgccgaacgtatg
gggcttgccatctcgctcgtatcttcagtgccggagaaggtgtggtaccacggcgagtgg
tgttcgtcccgcggccgcaattgttggaacacgaacctcatcgacgatcggcccaaaggc
tgctgcatgtggtacaacgagccacaatacttggcagatatcgaagaccacctgaacgtc
actatccaacaaatagaaagcgacatgaaggtgccgagcaacgaattcgacgggaaggtc
gtctatggtgagaagaggaagcaaatcggctctggataccaggaccacgtaagtcaaatg
gcgccggtcgttcgctcgttgcaagagttagaatcacaagctcagctttactatctcaag
atgcatcataatgtaaccatcgcctga

DBGET integrated database retrieval system