KEGG   Amyelois transitella (navel orangeworm): 106134204
Entry
106134204         CDS       T09957                                 
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3 isoform X1
  KO
K22611  squamous cell carcinoma antigen recognized by T-cells 3
Organism
atra  Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:atra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106134204
   03036 Chromosome and associated proteins [BR:atra03036]
    106134204
Spliceosome [BR:atra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    106134204
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Histone modification proteins
   Other histone modification proteins
    106134204
SSDB
Motif
Pfam: RRM_1 Suf HAT_PRP39_N RRM_5 RRM_occluded DUF4283
Other DBs
NCBI-GeneID: 106134204
NCBI-ProteinID: XP_060806505
LinkDB
Position
22:complement(join(4523708..4523861,4524153..4524341,4524679..4524911,4525257..4525377,4525871..4525964,4526371..4526647,4527115..4527335,4527600..4527711,4528237..4528410,4528980..4529189,4529411..4529516,4529679..4529755,4530118..4530271,4530829..4531000,4531240..4531415,4531828..4531937,4532346..4532444))
AA seq 892 aa
MAIVEDEVRNESEEENEIEVVVEEDEQDSEDSDDEEDEGVLESKVAELEKKISEDPYNYE
EHIELIQALWTLTELDRWRNAFERLQQMTALRAEHWLLWLQTEASLAHSSESREHIAGLF
KQAAMDCYSIPILTEWCSWALSTGDAKETRAQLEEVLHRAGADPFSGKLFWDAKLEFEKA
QLESISNEAEEEYKEQQKRVLYCLEEVVSRPLLRGEEAWQQLHELATTLHDAQYVQKIKE
QHEAAVEYLNKITPYEDKLLTTENPEDKCRIYEEYIALVKELSRNDEYAECDSNGILKVL
YERVSSECAGSERAHAWLVEYARLAGRVSSRATLARVLRAGARRCPRRHTFWARLMQQAE
HEGKPAHEVKSIFETALSKGMETYKHAEALWLAWLEFSRRNTAFNNESEVQLLRSTFRLA
WDSLAKAWGEEANDCEVPLFWARLEYKRMGDPKQGKEIFEEIFRYGENKTMSKYWEALIQ
LESNRSPPPSHNKLRDLHRRALRYVADYPPSVARLWMDFERDLGDLETLRECADVTEAKL
QEWRDSYQAMKDKMTGKKHNQKPMDKKAKFDKKNKRDDRPKNKGKRKSGGEEGGSDGKRR
KEDMEVEVQEQDKEESGGVKRSHDEDDEDESQPKRQRTVSEENERIGREACTLFVSNLEF
KVNEENLRKKLSQYGDIVSMRVKAGVKAFGGSICYCQYKTVEAVDKALKDDRTPLDGRPM
FFSRYSAKKTKPTFKYATTAEKNKLFVKNLPFSYCTKKALSELFDKYGKLSDVRVVTFKD
GKPKGLAYIEYADESSAAAALAATNGLQLESRKIDVALSAPPPRAPPTTSLGLPKRDAGG
GMRRTQLSSFIPSVLQKPSPSTSKANGNSNGDTNGDKRPLSNSDFRSLLLKK
NT seq 2679 nt   +upstreamnt  +downstreamnt
atggctatcgttgaggatgaagtgaggaatgagtctgaggaggaaaatgaaatagaagtg
gttgttgaggaagacgaacaagattctgaagattcggacgatgaagaagatgaaggtgtt
cttgagagtaaggtggcagagcttgaaaagaagatttctgaagatccctacaattatgaa
gaacacattgagctaattcaggccttgtggacgctgacggaactagacaggtggcgcaat
gcctttgagcgactgcaacaaatgacggcactccgggccgagcattggcttctgtggctg
cagacagaggcttccctggcacactcctctgagtctcgcgagcacattgcaggattgttt
aaacaggcagcaatggactgctattcaatccctattctaacggaatggtgctcatgggcc
ctaagtacaggtgacgctaaagagacgcgagcgcaactggaggaggtgttacaccgcgcg
ggcgcagaccccttctccgggaaactgttctgggacgccaagttggagtttgagaaggcg
cagttggagtctataagcaatgaagcagaagaagaatacaaagagcaacagaagagagtg
ttgtactgccttgaagaagttgtgtcgcgacccttactgcgcggagaggaagcatggcaa
cagctgcacgagctggcaacaacgcttcacgacgcgcagtatgttcagaagattaaagaa
cagcatgaagcggccgttgagtatttgaataaaataacgccatatgaagataagctgttg
actacagagaatcctgaagacaagtgtagaatttacgaggaatatattgctttggttaaa
gagttgtcacgcaatgatgaatatgcggaatgtgacagcaatggtattcttaaggtactg
tacgagcgcgtgagctcggagtgcgcgggcagcgagcgcgcgcacgcgtggctggtggag
tacgcgcggctggcgggccgcgtgtcgtcgcgcgccacgctggcccgcgtgctgcgcgcg
ggcgcgcgccgctgcccgcgcaggcacaccttctgggcgcgcctcatgcagcaggccgag
cacgaggggaagcccgcccatgaggtgaaatcaatattcgagacggccctctcaaaaggc
atggagacgtacaaacacgccgaagcgctctggctggcgtggctcgagttcagtcggcga
aacactgcattcaacaatgaaagtgaagttcaactgctgaggagcactttccgacttgcc
tgggactcattggctaaggcttggggcgaagaggcaaatgactgtgaggtgccgttgttc
tgggcacggctggaatacaaacgtatgggggacccgaaacaaggcaaggagatattcgag
gaaatattcaggtacggtgagaacaaaaccatgtccaaatactgggaggcactgatccaa
ctggaatcgaaccggtctccgccgccgtcgcacaacaagctcagagatctacaccgcagg
gcgttgcgttacgtggcggactacccgccaagtgtggcgcgattgtggatggacttcgag
cgggatttaggtgacctggagacgttgagagagtgtgctgacgtcactgaggcgaaactg
caagaatggcgcgatagctaccaagctatgaaggataaaatgaccggtaaaaagcacaat
caaaagccaatggataagaaagctaaatttgataagaaaaataaacgtgatgacagacca
aagaataaagggaagaggaagtctggaggggaggaagggggaagtgacgggaagagaagg
aaggaggatatggaggttgaggtgcaagagcaggacaaagaagagagcggcggagtgaaa
agatctcacgatgaagacgatgaggatgaatcacagcccaaacgccagcgaacagtgagt
gaggaaaacgagagaataggacgtgaagcctgcactctctttgtctccaatttagaattc
aaagtgaatgaagaaaaccttcggaagaaactgtcgcagtacggcgatatagtgtctatg
cgagtaaaggccggagtcaaggcattcggcgggtcgatatgctactgccaatacaagact
gttgaggcagtggacaaagctttaaaagacgaccggacaccattagacggtcggcccatg
ttcttctcacggtactcggcgaagaagacgaagcccacgttcaagtacgcgaccacggca
gagaagaacaagctgtttgtgaagaacctacctttctcttattgcacgaaaaaggcgtta
tcggaactcttcgataaatatggcaagctgagcgacgttagggtagtcactttcaaagac
ggaaaaccgaaaggtctcgcgtacatcgaatacgcggacgaatcatcagcggcagctgct
ctcgcggccaccaacggcctccaactggagtccaggaagatcgacgtggctctcagcgcg
cccccaccacgagcgccccccaccaccagtctcgggctgccgaagagggacgctggaggg
ggaatgcggcggacacaactaagcagtttcatcccgagcgtcctacaaaaacccagccct
tcaaccagcaaagctaatgggaactccaacggtgacacaaatggcgacaagcgaccactc
agcaatagcgacttcagaagcttactactcaagaagtag

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