KEGG   Amyelois transitella (navel orangeworm): 106134300
Entry
106134300         CDS       T09957                                 
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106134300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106134300
   03012 Translation factors [BR:atra03012]
    106134300
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106134300
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     106134300
Translation factors [BR:atra03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    106134300
SSDB
Motif
Pfam: Helicase_C DEAD HA2_N OB_NTP_bind HA2_C nSTAND3 AAA_19 AAA_22 ComA RsgA_GTPase Cas3-like_C_2 ABC_tran
Other DBs
NCBI-GeneID: 106134300
NCBI-ProteinID: XP_013189762
LinkDB
Position
17:complement(join(6072914..6073031,6073502..6073676,6073858..6074123,6074377..6074701,6075231..6075409,6075791..6076021,6076894..6077362,6077485..6077773,6078212..6078374,6078646..6078815,6079044..6079622,6081399..6081653))
AA seq 1072 aa
MSRRGRNSAPYRQCNKGFSWGDRRFEPPTPGTSDDLEPVRRPRGLRGKDIGLYYRDRAMK
NAEARKEGNIYGKKGTFKKRPEDYILTLKIPMPIVYKLDADLQSILEKANKSNIKVERDE
EVIIKQECKDDSDNFEFKKPKIPQNDLEQNTSKAPDFVPIKNEVSFDYGNNIRQLSFRGA
GDFKYGYEDIITGSFDQKLDECLANGIKIIESTNNINEISKQLYDDYTSMLKNSQYNKFL
EFRKKLPTYNKTSDLLDVIKNNQVIVISGETGCGKSTQVPQVILDDAIANLKGGNIKILV
TQPRRIAALSLAMRVAQERGEKVGTSVGYVVRLERVDCRNRGSITFCTTGVLLVDLETDQ
GLTKYSHIILDEVHERDTHIDLAMCMLKKVLKKRKDLKLILMSATIDADKLSSYYDDCPM
MHIEGLAYPVQDIYLEEILQTTGFIPDLEQMGKNKNMSKPRWHKYIKKKSKETISEQMIK
YRAEVGPWLESLKKSGNINNDVYNTLSDYRIEELNTELILNLLIHICRGDPGAVLIFLPG
IGDITKLLSLMEQSNAFPSNLYEIYPLHSKLPTVQQQKIFERPPDHIRKIIVATNIAETS
ITIDDIVYVIDCGRIKYNGLNVEDYITTLQTHWVSKANLRQRRGRAGRCQPGICYHLLTS
FRASKLEERLLPELQRNNLLEPVLSIKRLRLGLAESALQLVPDSPDVTTIKRAVKHLQQC
GALDDKETLTPLGWHLARLPVHPAAGKLLVLGTLLGCLDRAASLASVWSFKDPFLMVIGH
EREAEEAKQNLALGEPSDHVAMSEAIIQWEYLPKRERRSFAYNNFLAHNTLELLSDMKLQ
LVDHLKQMGFLAAADVRSPWENRNGNNLSVFKAVVAAALYPNIGSVRWIGLQSRKLNRNP
RVKVHTPEDGSIQIHPSSVMCVHHKHGGKRIACNNPGANWLVYWLKQRSSDLFLIDVTLV
HTLPLLFFGELKIDIMEKDTCLMSISTFKVRCPKDQADKLIQLRKFLDDVLASKITVNSS
HATTHSYFEESVLRAVTDLITAEDEGMDYFEEDDTASSDASECEQHPKMFYR
NT seq 3219 nt   +upstreamnt  +downstreamnt
atgtctcgtcgaggcagaaattcggcaccataccggcaatgtaacaaaggtttctcatgg
ggagacaggcgttttgaaccaccaacacctggaacttctgatgaccttgaaccagtgcgt
cgcccacgaggcttacgagggaaagacatcggtctgtactatagagatcgtgctatgaaa
aacgcagaagcgcgtaaagaagggaatatatatggcaagaagggaacatttaagaagagg
cctgaggattatattctcaccctgaaaattccaatgcctattgtttataagctggatgca
gatttacaatctattctagagaaagcaaacaaatcaaacattaaagtagaaagagatgaa
gaagttattataaaacaggagtgtaaggatgattctgataattttgagtttaaaaaacca
aaaataccccaaaatgacttagaacaaaacacttctaaggctcctgattttgtaccaata
aaaaatgaggtgtcatttgattatggaaataatataagacagttgtcattcagaggggct
ggggacttcaaatatggctatgaagacatcatcacgggttcatttgaccaaaaacttgat
gaatgtcttgctaatggaatcaaaattattgagagtaccaataatattaatgaaataagt
aaacaattgtatgatgattatacaagtatgctaaaaaactcacagtacaataagtttttg
gagttcagaaagaagcttcccacttataataaaaccagtgacttgttggatgtaattaag
aataaccaagtgattgttataagtggtgagacaggatgtggaaaatcaacccaggttcca
caagtaattttagatgatgctattgctaatctgaaaggtggcaatattaaaatactagta
acccagccaagacggattgctgctttatccttggccatgagggtagctcaggaaagaggt
gaaaaagttggcacatctgttggatatgttgtgagacttgaaagagtggactgtcgcaac
agagggagtatcactttttgcacgacaggtgtcctcctagtcgacttagagacagaccaa
ggtttaacgaaatacagtcacattatattagatgaggtgcatgagagggacacgcatatt
gatcttgctatgtgcatgctaaaaaaggtccttaaaaagcgaaaagatttgaagctcata
ttgatgagcgcgactatcgacgctgataagctaagctcttattacgatgactgccctatg
atgcacatagaagggttggcataccccgtacaggatatctatttagaagaaatccttcaa
actactggattcataccagacttagaacagatggggaaaaataaaaacatgtcgaagccg
cgatggcacaaatatataaagaagaaatcaaaagaaaccatttcagaacagatgataaag
tatagagctgaagttgggccttggctagaatctttaaagaagtctggtaacataaacaat
gacgtatataacacgttaagcgactatagaattgaagaacttaacacggaacttattctt
aaccttttaatccatatttgtcgcggtgaccctggcgcagtattaatattcttaccgggc
attggcgacattactaaactactcagcctaatggaacaaagcaatgctttcccttcaaat
ctgtatgaaatctaccctttacattcaaagttacccactgtgcaacaacaaaagatattc
gaaagaccgccagatcatatcaggaagataatagtggcgacgaacatagcagagacatct
ataactatagacgacatagtgtatgtgattgactgtggcagaatcaaatacaatgggttg
aatgtggaggactatatcactacactacaaacgcattgggtttctaaagccaatttgcga
caaagacgcgggcgtgctggtcgttgccagccaggcatctgttaccacctcctgacgtca
ttccgggcctcgaaactcgaagaacgccttctacctgagctgcagaggaacaaccttctg
gaaccagtattatccatcaagagactaaggcttggcttagcggaatccgccctccaatta
gtacccgactctcctgatgtaactactattaagagggcggtcaaacatctacagcaatgt
ggtgccctagatgacaaggaaaccctgacgcctctaggctggcatttggcaaggctgccc
gttcacccggcggctgggaaactactggtgctgggcactttactgggctgtctcgaccgc
gctgccagcctggcttctgtatggagcttcaaggacccctttctaatggtcattggtcac
gagagagaagcagaagaggccaaacagaacctcgctctaggtgagccaagcgaccacgtg
gccatgtcagaagctatcatccaatgggaatatctgccgaaaagagagagacgaagtttc
gcgtacaacaatttcctagcccataatactttagaacttttatctgatatgaagctgcaa
ttggtggatcatctaaagcaaatgggcttcttggcggcggcagatgtgaggtccccgtgg
gaaaataggaatgggaataatttaagcgttttcaaagctgtcgttgcagccgccttgtac
ccgaacatcggctctgtgagatggataggtcttcaaagcagaaagcttaatcgaaatccg
cgtgtaaaagtgcatactccagaagacggcagtatacaaatacatcctagtagtgtgatg
tgtgtccatcacaagcacggtggcaaaaggatcgcgtgtaacaacccgggcgccaactgg
ttggtctactggttgaagcagcggtcgtccgatctcttcttaatcgatgttaccctagta
catacgctacctctgctgttctttggtgaactgaaaattgatataatggaaaaagatacc
tgtctgatgtcaatatctactttcaaagtgcggtgtcccaaagaccaagcagacaaactg
attcaattgagaaagtttttggatgatgttttggcttcgaaaatcacagttaactcttct
catgctaccacacacagctattttgaagaaagcgttttaagagctgtcaccgatttgatc
actgctgaggacgaaggtatggattacttcgaagaagacgacacggccagctcagacgcg
tcagaatgtgaacaacatccaaagatgttttatcggtaa

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