Amyelois transitella (navel orangeworm): 106134314
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Entry
106134314 CDS
T09957
Name
(RefSeq) probable ribonuclease ZC3H12C isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106134314
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
106134314
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
106134314
NCBI-ProteinID:
XP_013189785
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All DBs
Position
17:complement(join(7148959..7150060,7150444..7150676,7151084..7151257,7161760..7161981))
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AA seq
576 aa
AA seq
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MSHEKELFISVPRSCIGDFYSKYLNLVETFYCVTLCEAPSIVKDRPEYVFFKVIFNLNPA
DGSFNPRELIGRIQKYVESSLGWAGERGEDSSYDSECEDESAHRAASRTPSDTLAAEFAE
YVTLAPLPQPNQAKIEFAVKLGYSERLARIALQRLGPDPPRNELLAELIKLAAKQPPRTL
SPPPPTDPDPPPDREQLRQIVIDGSNVAMSHGNKEVFSCRGIEICVDWFRARGHKDIIVF
VPKWRKEASRPDNPVADRDALERLERDRVLVYTPSRLVGGKRLVCYDDRYILRLAADTDG
IVVSNDNYRDLAAENPEFRKVVEERLLMYSFVNDRFMPPDDPLGRSGPTLDAFLRAPPSR
ADPPPACPYGRKCTYGNKCKFHHPERAGRPHKSVAEKLSERAARALRARDLHTVSLPPGG
RPADSKRPLARAHSAAPRLADAALATHFERAQLQLPGPSQPPPDANPHRKLARQLTLNPA
SDPRLPHAAAARVASAPAGAAGAALAQLSPCASEGALQHWDARRRMHFHLAGIFPEAQVA
EAMAAYPEETDAQTMCAIILARYRPSEARLPRQPPH
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaaaaagagctatttatttcggtacctcgttcttgtattggtgatttttac
agcaaatatcttaatttggtagaaactttttactgtgtcacattatgtgaggctccaagc
atcgtaaaagatagacctgaatacgtgttcttcaaagtcatatttaacttgaatccagct
gacggaagctttaacccacgcgaattaattggacgtatacagaaatatgtggagtcatca
ctgggctgggcaggcgaacgtggggaagactcgagttacgattcggagtgtgaagacgag
agcgcgcaccgcgccgcctcccgcacgccgtccgacactctagcggcggagttcgctgaa
tatgtgacgcttgcgccgttgccgcagccaaaccaggcgaagatcgagtttgctgtgaag
ttgggttattctgaacgactagcaaggatagctttacaaaggctgggacctgatcccccc
aggaatgaattattggcggagctcatcaaactggccgctaagcagccgccaagaacactt
tctccgccgccaccaactgaccctgacccaccgcccgatagggaacaacttcgccaaatc
gtcatagatggcagcaatgtcgcgatgagccatggcaacaaagaggtgttttcgtgccga
ggaatagaaatttgcgttgactggttccgggcccgcgggcataaagacatcatagttttt
gtaccaaaatggcgcaaggaggcctcacgaccagacaacccggtcgccgaccgagacgcg
ctcgagagactcgaacgagacagagtattagtatacactccgagtcgcctcgtcgggggc
aagaggctggtttgctacgacgacaggtacatcctccgactcgccgccgacactgacggt
attgtcgtgtccaacgataactacagagacctcgcagccgagaatccggaattccgcaaa
gtggtcgaggaacgactcctcatgtattccttcgtcaacgatagattcatgccgcccgac
gacccactgggacgatcggggccaacactcgacgcatttttacgcgcaccaccgtctcgc
gccgatcctcccccggcgtgcccctacggacggaaatgtacgtacggcaacaaatgcaag
ttccaccatcccgagcgcgccgggcgcccgcacaagtccgtggccgagaagttgtccgaa
agggcggcgcgggcgctgagggctcgcgatttgcacaccgtcagtttgccgccgggcgga
cgtccggcggactccaagcggccgctggcgcgggcgcactcggccgcgccgcgcctggcc
gacgccgcgctcgccacccacttcgagcgcgcgcagctgcagctgcccgggccgtcgcag
ccgccgccggacgccaacccgcaccgcaagctggcgcgccagctgacgctgaacccggcc
agcgacccgcggctgccgcacgcggcggcggcgcgcgtggcgtcggcgccggcgggggcg
gcgggcgcggcgctcgcgcagctgtccccgtgcgcgtccgagggcgcgctgcagcactgg
gacgcgcgccgccgcatgcatttccacctcgccggcatattccccgaagctcaagtcgcg
gaagcgatggcggcctaccctgaggagacggacgcccaaaccatgtgcgcgataattctt
gcgagatacaggccgagcgaggcgaggctgccccgccaaccgccgcactga
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