KEGG   Amyelois transitella (navel orangeworm): 106135014
Entry
106135014         CDS       T09957                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03022  Basal transcription factors
atra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106135014
  09124 Replication and repair
   03420 Nucleotide excision repair
    106135014
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106135014
   03400 DNA repair and recombination proteins [BR:atra03400]
    106135014
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     106135014
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     106135014
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     106135014
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom AAA_34
Other DBs
NCBI-GeneID: 106135014
NCBI-ProteinID: XP_013190628
LinkDB
Position
11:complement(join(4884557..4884742,4884857..4884940,4885060..4885202,4885512..4885855,4887529..4887712,4888148..4888368,4888670..4888840,4890295..4890461,4890809..4890960,4891639..4891787,4892065..4892259,4892493..4892633,4893922..4894075,4894210..4894267))
AA seq 782 aa
MGPPKKFKKYDSKPGSDRSSKKKKVEDDNMTIDLVEDDNTENVGVPGAAMQDAEKNDQQV
PEDEFGAKDYRNQMTLKPDNASRPLWVAPNGHIFLEAFSPVYKHAHDFLIAISEPVCRPQ
HIHEYKLTAYSLYAAVSVGLQTADIIEYLQRLSKCAVPAGIIEFITLCTLSYGKVKLVLK
HNRYLVESKHVEVLQKLLKDPVIQQCRLRRDGDDDLLASALPNKPATTATKTSEDKPAAA
NGSVPDDISQFYQQLDKDDDEDEVTDISSNTAVAFEVDPDKIEVIQKRCIELEHPLLAEY
DFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAVC
TVRKRALVLCNSGVSVEQWKQQFKCWSTADDSCICRFTSEAKDKPMGAGILITTYSMITH
GQRRSWEAEQTMKWLQAQEWGLVVLDEVHTIPAKMFRRVLTIVHSHAKLGLTATLLREDD
KIADLNFLIGPKLYEANWLELERAGYIARVQCAEVWSPMTPEFYREYLIQKINKKMLLYV
MNPSKFRACQFLVRYHEKRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQNERIQILQN
FKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEY
NAFFYTLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDLFYGTREEQGMLLQ
QVLAASETECEDEREPGAGGAGGARRGAGALSSLAGADDALYLEHRRNAQHNKHPLFKKF
RY
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgggaccgccaaagaaatttaaaaaatatgactcgaaaccaggaagtgatagatcaagt
aaaaagaaaaaagttgaagatgataatatgacaatagatttggttgaagatgataacaca
gagaatgttggagtgccaggggcagccatgcaagatgctgaaaaaaatgatcaacaagtc
cctgaagatgaatttggagctaaagattataggaatcagatgacactaaagcctgacaat
gcgagccggcctctctgggtggctccaaatggccatatttttttggaagccttctcacca
gtctacaaacacgcacatgacttcctaattgctatttctgaaccagtctgcaggccacaa
catattcatgagtacaagctgactgcatacagtttatatgcggcggtgtctgtgggcctc
caaactgcagacatcattgaatatctccaaaggttgagcaagtgcgccgtgcctgcggga
atcatagagttcataacattgtgcacattgtcttacggaaaagtgaagcttgttcttaaa
cacaacagatatttagtagagagcaagcacgtagaagtgcttcaaaaattgctgaaagat
ccggtgatacaacaatgtcggctgcggcgagacggagacgacgatctgttggcgtccgcg
cttcctaacaaacctgccacaaccgcaactaaaactagcgaggacaagccagcagccgcg
aacggcagcgtccccgacgacatcagccagttctaccagcagctggacaaggacgacgac
gaggacgaggtcactgacatctcgtccaacaccgccgtggccttcgaagttgaccccgac
aagattgaggtgatacaaaaacgatgtatcgagttagagcatcctctgctggccgagtac
gatttccgcaatgactcggtgaaccccgacataaacattgacctgaagcctacggcggtg
ctacggccctaccaggaaaagagtttgagaaaaatgttcggcaacggacgtgcgaggtcc
ggtgtgatagtgttgccgtgcggcgcgggcaagtctctggtcggcgtgacggccgtgtgc
acggtgcggaagcgagcgctcgtgctgtgcaactccggcgtctccgtggaacagtggaag
cagcagttcaagtgctggtccaccgccgatgacagctgcatctgccggttcacatcagaa
gcgaaagacaagccaatgggcgcgggcatcctcatcaccacttactccatgatcactcac
gggcagcggcgctcgtgggaggccgagcagaccatgaagtggctgcaggcgcaggagtgg
gggctggtggtgctggacgaggtgcacacgatccccgccaagatgttccgccgggtgctc
accatcgtgcactcgcatgccaagctgggtttaacagccacactgctgcgcgaagacgac
aagatagcggacctgaacttcctgatcgggcccaagctgtacgaggccaactggctggag
ctggagcgcgccggctacatcgcgcgcgtgcagtgcgccgaggtgtggagccccatgacg
cccgagttctaccgggagtacctcatacagaaaataaacaaaaaaatgttgttatacgtg
atgaacccgtccaaattccgcgcgtgccaattcctagtgcgctaccacgagaaacgggga
gacaaaactatagttttctccgacaacgtgttcgcgttacgacattacgccgtcaagatg
aacaaaccctatatttatggacccacgtcgcaaaacgagagaatacaaatcttgcaaaac
ttcaagttcaatccgaaagtgaacacgatatttgtcagcaaagtcgcggacacgagcttc
gatttgccagaagcgaatgtcttgatacagatctcgtcgcatggcggctcgagaaggcag
gaggcgcaacggttgggtcgtattttgcgtgcgaagaaaggcgccctagcagaagagtac
aacgctttcttctatacgctcgtatcccaagacactctcgagatggcctacagcaggaaa
agacagcgtttcttggtcaaccaggggtacagttataaagttattacagaactgaaaggc
atggatcaagaaccagatttattttatggtactcgtgaggagcaaggaatgttgctgcag
caagtgctggcggcatcggagacggagtgcgaggacgagcgcgagccgggcgcgggcggc
gcgggcggcgcgcggcgcggcgcgggcgcgctgtcgtcgctggcgggcgccgacgacgcg
ctctacttggagcaccgccgcaacgcgcagcacaacaagcatccgctcttcaagaagttc
cgatactaa

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