KEGG   Amyelois transitella (navel orangeworm): 106135035
Entry
106135035         CDS       T09957                                 
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
  KO
K06823  collagen type XVIII alpha
Organism
atra  Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:atra00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:atra04147]
    106135035
   00535 Proteoglycans [BR:atra00535]
    106135035
   00536 Glycosaminoglycan binding proteins [BR:atra00536]
    106135035
Exosome [BR:atra04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   106135035
Proteoglycans [BR:atra00535]
 Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   106135035
Glycosaminoglycan binding proteins [BR:atra00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106135035
SSDB
Motif
Pfam: Endostatin Collagen Collagen_trimer DUF1554
Other DBs
NCBI-GeneID: 106135035
NCBI-ProteinID: XP_013190661
LinkDB
Position
11:complement(join(7323790..7323895,7324074..7324157,7324601..7324744,7325196..7325375,7325643..7325776,7326503..7326646,7327099..7327191,7327410..7327507,7328416..7328665,7333281..7333379,7334266..7334409,7334518..7334727,7334854..7334897,7335124..7335216,7335601..7335718,7336415..7336576,7337050..7337247,7337571..7337726,7339828..7339935,7342386..7342432,7343109..7343193,7354923..7354973,7355271..7355342,7378675..7379222,7382082..7382164,7451294..7451346))
AA seq 1167 aa
MVIKYYSAQFPPAMECFRYHCLLILLFASLCSANDGFTSLSKFQYDILEYDLLHAIAVPF
RNPKTQYFDEGLDGFPAYGLKPGSDIKSPYRLFMPEKLYPEFSITATVRPANKDGGFLFS
VVNPLETVVQLGVKLIPSGPGLTNISLLYTDANIYALSQTIASFVVPSFAKKWTRFGLRV
TTDNVTLYLNCHEFNTVTVKREPLELVFDSASTLYVGQAGPLIGGAFHGAYQELKLFESP
SQAAVQCVNTFKDFGSGNEYDEIDIDNFLVDQEDGDAEGSGRYGTIPPFPPPPPGLDGYP
MRLRGEKGERGPRGPPGESIRGPPGPPGPPGVPGTPGTSLAEISGSGDDQIFGENYSSLG
QCGCNSSTILALLQTAPELKGPPGPPGLAGADGRAGTPGITGQSGPPGERGPVGPRGEKG
ERGDLGPRGPEGPIGPKGEAGVDGRPGIPGPPGPPGPPGTSEYQHFDDHLGYGEHLGRPG
APGPKGDAGQPGPIGPQGERGFPGHKGDRGQPGAAGSKGERGHAGPQGDRGLKGEPGRPG
LDGRPGIPGANGRPAEKGEKGERGLPGPPGPPVLVSEDPEFASGYGSGLGTGRASEIGAK
GEPGEKGEKGSRGNDGLAGFPGKDGKPGDRGDIGPSGMPGMSGPPGPPGLKGERGERGPP
GPVSISGAGADVITIKGDKGEPGPRGRRGRPGPAGPRGLQGLPGIPGAPGRPGEKGESGS
SGWMGKPGTLGPPGIPGPVGPKGEKGDPGINILDASMFKGEKGDPGLDGLPGPPGADGAP
GPPGPPGVVSEPVRYLPGPPGPPGPPGPPGLSIVGPKGEPGVNYYDEHPVHGNTKYYGRP
GAFSSSPIHSDESTPEKKLPSAAVFHTTTEMMKSAASSPVGTLAYIVEEQALVVKVNSGW
QYVLLGSLVTHPTPPPPSTSSPFKPAIPAESLVHNPSLSNSVDDSASYTGPYIHLAALNN
PMPGNMYGGVRSADYACYRQARRAGLRGTYRAFITNRIQNLDSIVRPSDRHLPVLNMQGE
VLFKSFSDIFDGNGGLMGGSPRIFSFNGKNIMTDSHWPQKIIWHGAHASGERAFDAFCEE
WQSSDPASRGMSASLYSHKILSQERHTCNNHFAVLCVEATSNASKRSKREAKRYNSTALL
DDEDYLYNAEEYQQLLNEIFAQPFREN
NT seq 3504 nt   +upstreamnt  +downstreamnt
atggttataaaatattactccgcgcaatttccgccggctatggagtgttttcgatatcat
tgtcttttgatactactgtttgcaagtctatgttctgcaaatgatggattcactagcctt
tccaaatttcaatacgatattctcgaatacgacctactccacgccatcgctgtgccgttc
aggaatcctaaaactcaatacttcgacgaaggcctcgacggtttccccgcatacggtctc
aagcctggttccgacataaaatccccataccgactcttcatgcccgaaaaactttacccc
gaattctcaataacagccacagtgcgccccgcaaacaaagatggcggctttctcttctcc
gttgtaaatcccttagaaacggtcgtccaattgggcgtaaaactgatcccatcagggccg
gggttgacgaatatatcactgttatatacagatgcaaatatctacgcattgtctcaaacg
atagcatcattcgtggtgccttcgttcgccaaaaaatggacgcgtttcggtttgagagtc
accactgataatgttactctgtacctgaactgccacgagtttaatactgttactgtgaaa
agagaaccattggaattggtattcgattcggcttcgacactgtatgtgggacaggccggg
ccattgatcggtggagcttttcacggcgcgtatcaagagctcaagttgtttgaatctccg
tcacaggccgcggtgcagtgtgtcaacacctttaaggatttcggtagcggcaacgaatat
gacgagattgacatagacaatttcttggtggatcaggaagatggagacgcagaaggttct
ggacgctacgggaccatcccccctttcccaccaccccctccgggactcgacggttaccct
atgagacttcgaggcgaaaagggagaacgcggaccgaggggcccacctggagagtcaata
cgtggaccaccaggtccgccaggtccgcccggtgtgccgggaactccgggcaccagttta
gcagaaatatccggatctggtgacgatcaaatttttggagagaactactcgtcgcttgga
caatgcggttgtaactccagcaccatcctggctctccttcagactgctccagagctgaag
ggtccacctggtcccccaggactggcaggagccgatggaagagcaggcacgcctggtata
actggacaatcgggacctccaggtgaacgtggtcccgtagggccacggggtgaaaaagga
gaacgaggtgatttgggtccacgggggcccgaagggccaatagggcctaaaggcgaagca
ggagtggatggaagaccgggcataccgggaccgccaggcccccccggaccaccagggact
tcggaatatcaacacttcgatgaccacttgggatacggtgaacatttaggccgtcctggt
gcaccggggccaaaaggcgacgcaggacaaccaggtcccattggaccacagggtgaaagg
ggcttcccgggtcataaaggagacagaggacaacctggtgcagctggttcaaaaggagaa
cgtggtcatgcaggtccccaaggagatcggggattaaaaggtgaacctggtcgtccaggc
cttgatgggcgcccgggcatacctggagccaatggacgaccagctgaaaagggtgaaaaa
ggtgaacgtggcttgccgggtcctccaggtccaccagttctggtttctgaagatcctgaa
tttgcatccggttatggttctggacttggcacaggtcgtgcaagtgaaataggcgctaaa
ggcgagcctggagaaaagggtgaaaaaggcagtagaggaaatgacggactcgcaggattt
cctggtaaagatggaaagccaggtgacagaggcgacatcggaccatcaggcatgcctggc
atgtcagggccacctggacccccgggcctaaaaggcgaaaggggtgaaaggggacctcct
ggaccagtcagtataagtggcgcaggagctgatgttattacaattaagggcgataaagga
gaaccaggtcctagaggtagacgaggacgtccaggcccagctgggcccaggggtctacag
ggattaccaggtatacccggggcaccaggtcgtcccggggaaaagggcgaaagtggatcg
tcaggttggatgggaaagcctggtactctaggcccgcctggcataccagggccagtggga
cccaaaggcgagaaaggagatccaggcatcaatattttagatgcatctatgttcaaggga
gaaaaaggggatccagggttagatggtcttcccggacctccgggtgcggacggcgctcct
ggacccccaggtccccctggggtagtatcggaaccggttcgttatcttcccggaccacca
ggcccacccggtcctccagggccaccaggcctgtccatagtgggtccaaaaggcgaaccc
ggagttaattattacgatgaacatccagttcatggaaacaccaagtattatggaagacca
ggcgccttttcatcgtcaccaatccattctgacgaatcaacgccagagaagaaattgcca
tcagctgctgttttccatactactacagaaatgatgaagtctgcagcatcaagtcctgtt
ggcactttggcgtacatagtagaagaacaagctttggtggtcaaagtcaactctggctgg
cagtatgttttgctgggatcattagtgacacatccgacaccaccgccgccgtctacttca
tcaccgttcaagcccgcaatacctgctgagagcctggtccacaacccatctttatctaac
tcagttgacgattccgcttcgtacacgggaccttatattcatttggcggcgttgaataat
ccgatgccgggcaatatgtacggcggagtgcggagtgccgattacgcctgctaccgacag
gcgcgcagggccggactcaggggcacgtatagggcgttcatcacaaacagaatccaaaac
ctagactcaatagtgcgcccgtcggatcgccatcttcctgtcttgaacatgcaaggggaa
gtcctgttcaagtcgttctcggacatcttcgacggcaacggggggctgatggggggatcc
cccaggatattcagtttcaacggcaagaatatcatgactgattcgcattggcctcagaaa
ataatttggcacggagcacacgcgagcggggagcgggcgtttgatgctttctgcgaggag
tggcagagcagcgaccccgccagcaggggaatgtctgcatcactatattcccacaaaata
ttgtcacaggaacggcacacttgcaacaatcacttcgctgtcctgtgtgtcgaagcaaca
tcaaatgctagcaaaagaagtaaaagagaagcaaaaaggtacaactcaacggcgctatta
gacgacgaagactatttatataatgctgaagaataccaacagttactaaacgaaatattt
gctcaaccatttagagagaattag

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