Amyelois transitella (navel orangeworm): 106135082
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Entry
106135082 CDS
T09957
Name
(RefSeq) uncharacterized protein LOC106135082
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106135082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atra03041
]
106135082
03009 Ribosome biogenesis [BR:
atra03009
]
106135082
Enzymes [BR:
atra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106135082
Spliceosome [BR:
atra03041
]
Complex A
U1 snRNP components
U1 related factors
106135082
Complex B
106135082
Ribosome biogenesis [BR:
atra03009
]
Eukaryotic type
Pre-60S particles
Helicases
106135082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
DUF6505
Motif
Other DBs
NCBI-GeneID:
106135082
NCBI-ProteinID:
XP_013190726
LinkDB
All DBs
Position
11:complement(join(5870506..5870636,5871036..5871182,5871262..5871600,5871675..5871833,5871918..5872146,5872249..5873701,5876101..5876135))
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AA seq
830 aa
AA seq
DB search
MQYNGFHNQHPIFRPRTDRNEQFGKMPFFNGIPDFGGPKNFGGPRNNNMGNKNNFRPRND
FNGIRNDGNQNDFGGPKEFRPRNNFNNQTQRKENDGDKQMNPRGNMQYFKSDFGGPKQQN
FNNKNNFTANKTFNNNGQPGNGNGQQNFIPKKVFNPNNDRQQQSMEFKGRKLQSQKAKHP
GDSLIKPNWDLANLEPIQKDFYKPHPNVDARTEEEVMRFRSTKEITVSGNNIPRPNQIFD
EGNFPDHIMTTIKEQGWSEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVHIV
HQQRIQRGDGPVALILAPTRELAQQIQSVAQAYSAHGCIRNTCLFGGSPKGPQARDLERG
VEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM
WSATWPKEIQALAEDFLNDYIKVNIGSLNLSANNNIKQIIEVCEEHEKETKLTNLLKEIA
SERDNKVIVFVETKKKVDDIARAVRRNGHKALAIHGDKSQPERDAVLTEFRNGATTILIA
TDVAARGLDVEDVKFVVNFDYPNSSEDYIHRIGRTGRCQQSGTAYTFFTTGDARQSRALV
AVLRETGQNPPNKLNEMARTNNNNSGRNRWQQRKENNSGSSSPRQQNNQWNNKMAAVVNE
DNQNAYQNRNIQQQPPRFNNQNQNNQGYRQQNNFQKPVPFPSPNVFESIGNYQGGYNNGY
QNGYNSHNQNGFNQRPYNNSRNGNQQYRNNNTNGNKSGSGSSYGSPPPHFTTPQHYPQMH
PHHQEMLGGKYYGGGVGGGGPCGYQAAVGASVPFAHMAPGPLLYAAPVQQ
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcagtacaacggctttcacaatcaacatcctatatttagacctcgaacagaccggaat
gaacaattcggtaaaatgcctttcttcaacggtattcctgattttggaggcccaaaaaat
ttcggtggccccagaaataacaacatgggcaataaaaataactttcgacccagaaatgat
tttaatggaataagaaatgatggaaatcaaaatgattttggtggaccaaaagaattcagg
ccaagaaataatttcaataaccagactcaacgaaaggagaatgatggtgataaacagatg
aatcccaggggaaatatgcaatattttaagagcgactttgggggtcctaaacagcaaaat
tttaataacaagaacaacttcactgctaataaaactttcaataataatggccaaccagga
aatggcaatggtcagcaaaatttcattcctaaaaaagtatttaatcctaataatgatcgc
cagcaacagtcaatggaatttaagggacgtaagttacaaagtcaaaaagcaaaacatcca
ggtgatagccttattaaaccaaattgggatttggctaatcttgaaccaattcagaaagat
ttctacaaacctcatcctaatgtggatgctcgcacagaagaagaagtaatgagattccgt
tcaacaaaagaaattacagtcagtgggaacaacattccacgacctaaccaaatttttgat
gaaggtaacttccctgatcacattatgaccactattaaagaacaaggttggtcagagcct
actggcatccaagcacagggttggccaattgctttgtctggccgtgacatggttggcatt
gcatcaacaggatctgggaaaacacttgcttacatgcttccagcagctgttcatatagtt
caccagcagcgtattcagagaggtgatggtccagttgctttgatacttgcgcccacacgg
gaacttgctcaacaaatccaatctgtggcacaagcctatagtgcccatggctgtattaga
aacacatgtctctttgggggttcaccaaagggaccacaagctagggatctggaaagaggc
gtggaaattgttattgctacacctggtagactgattgatttcttagagcgaggcacaaca
aatctgcggcggtgcacctacttagtattagatgaagcagatagaatgcttgacatggga
tttgaaccccagattcgcaagattattgaacagattcggcctgatcgtcaagttttgatg
tggtcagctacctggcctaaagaaattcaagcccttgccgaagatttcctcaatgattat
attaaagtcaatattggatctttaaatctatctgcaaacaataatattaaacaaattatt
gaagtttgtgaagaacacgagaaagaaacaaaattaactaacctattgaaagagattgcc
tctgaaagagacaacaaggttattgtttttgtggagactaaaaagaaggtggacgacatt
gctcgtgctgtgcgtcgaaacgggcacaaagcattagctattcatggagacaagtcacaa
cctgaacgtgatgctgtactaacagagttcagaaatggtgccaccactattttgattgcc
accgatgtggccgcccgtggtcttgatgttgaagatgttaaatttgttgtcaactttgat
tatcctaactcctctgaagattatatccatagaattggtcgcactggtcggtgccaacaa
tctggtacagcatatactttcttcacgactggtgatgcgcgtcagtctcgtgctttagtt
gcagttctacgtgaaactggtcaaaatccccccaataaattgaacgagatggccaggacc
aacaataacaattcaggacgtaaccgttggcagcaacgcaaagaaaacaatagtggttca
agctcacctcgtcaacaaaacaaccagtggaataacaagatggctgctgttgtcaatgaa
gataaccagaatgcttaccaaaaccgtaatatccagcaacaaccaccccgtttcaataac
caaaaccaaaataatcagggttataggcagcaaaacaacttccagaaacctgtgcccttt
ccaagtcccaatgtgtttgagtccattggcaattaccagggtggctataacaatggctac
caaaatgggtacaacagccataaccaaaatggatttaaccaacggccttacaacaattct
cgtaatggtaaccaacaataccgcaacaacaacaccaatggcaacaaatcgggatctggt
tcatcgtatggttctcctcctcctcacttcactactcctcaacattatccacagatgcat
ccccaccatcaagagatgctcggtggcaaatattacggcggtggcgtgggtggcggcggc
ccttgcggttaccaggcggcggtgggagcaagtgttcccttcgctcacatggctcctggg
cctcttctctatgcagctccagtgcaacaataa
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