KEGG   Amyelois transitella (navel orangeworm): 106135124
Entry
106135124         CDS       T09957                                 
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
  KO
K12830  splicing factor 3B subunit 3
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106135124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106135124
   03041 Spliceosome [BR:atra03041]
    106135124
   03036 Chromosome and associated proteins [BR:atra03036]
    106135124
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     106135124
Spliceosome [BR:atra03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    106135124
 Complex B
    106135124
 Complex C
   U2 SnRNP specific factors
    106135124
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     106135124
    TFTC complex
     106135124
SSDB
Motif
Pfam: Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A Beta-prop_BBS7 GtgE Fungal_virus_P2_N
Other DBs
NCBI-GeneID: 106135124
NCBI-ProteinID: XP_013190780
LinkDB
Position
11:complement(join(6998406..6998546,6999394..6999668,6999839..7000289,7000410..7000636,7001001..7001140,7001394..7001598,7002006..7002172,7002366..7002550,7002766..7002921,7003219..7003526,7003990..7004166,7004271..7004428,7004693..7005167,7005348..7005542,7005814..7005984,7006332..7006557))
AA seq 1218 aa
MHLYSLTLQGSTCITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKVEIFG
IIRSMMSFRLTGGTKDYIVIGSDSGRIVIMEYIPAKNILEKVHQETFGKSGCRRIVPGQY
LAIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP
MFACLEIDYEEADTDPSGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG
GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITIETDDDMVTEIKLKYFDTVPVATSMCVLKTGFLFVACEFGNHFLYQ
IAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDELDSLSPILACHVADLAGEDT
PQVYLACGRGPRSSIRALRHGLEVAEMAVSELPGSPNAVWTVRRHKDEEYDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCHALGNDALVQVYPDGIRHIRADKRVNEWKAPG
KKSIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVSCMALGSVATGEQ
RAWFLAVGLNDNTVRIISLDPSDCLSPRSMQALPAGAESLCIVEQPFESGAKSALHLNIG
LSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQGTEAVLAVSSRTWLGYHYQNR
FHLTPLSYECLEYAAGFSSEQCAEGIVAISSNTLRILALEKLGAVFNQTYLPLEYTPRKF
VINSDNNHIIILETDHNSYTEEMKKQRRVQMAQEMREAAAGGGPEEQQLANEMADAFLSD
ILPENLFSSPKAGAGMWASQIRVVDMGIGGGQPSTLFKLPLEQNEAAVSMCLVRWAAHGE
HARPHLVVGVAKDAILSPRSCTEGSLHVYKIYGSTGKLELVHKTPIDEYPGALATFNGKL
VAGVGRMLRLYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVSDVQESVLCVKYKKREN
QLIIFADDTNPRWITNTTILDYDTIAMADKFGNIAIMRLPQSISDDVDEDPTGNKALWDR
GLLNGASQKGEIVVNFHIGETVTSLQRATLIPGGSEALLYATVSGSLGVMLPFTSREDHD
FFQHLEMHMRSENPPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDTDKQKAIAGDLER
TPAEVSKKLEDIRTRYAF
NT seq 3657 nt   +upstreamnt  +downstreamnt
atgcatctctacagtttgacccttcaagggtcaacatgcatcacgcatgccgtccacgga
aacttctctggcacgaagcagcaggaaattataatatcacgaggcaagacattggagttg
cttcgtcccgaccccaataccggcaaggtgcataccttgatgaaagtggaaatcttcggg
atcatacgttctatgatgtccttccgtctcaccggtggaactaaagattatattgttatt
gggtctgactctggacgcattgtcattatggagtatattcccgctaagaacattttggag
aaagttcatcaagagacatttggcaaatcaggatgccgaaggatagtacctgggcaatat
ttggccattgaccctaaaggtagagccgtaatgataggtgcaattgaaaaacaaaaactt
gtttacatattgaacagagatgcggaggctagactcacaatctcatcacctcttgaagct
cacaagtccaacacattggtttaccacatggtgggtgttgatgtgggctttgaaaacccc
atgtttgcttgtcttgagatagactatgaagaggctgatactgatccctctggtgaggct
gcccaaaaaacacagcagaccttgacattctacgagctagacttgggtctcaatcatgta
gtcagaaaatactctgaacctcttgaagagcatgctaattttttgatcaccgtacctggt
ggcaatgatggaccttcaggagtacttatttgttctgagaactacctaacttacaagaat
ttgggtgaccaacatgacatcaggtgtcctataccccgccggcggaatgacctggatgac
cctgaaagaggcatgatctttgtctgctctgccacccacaaaactaagtctatgtttttc
tttttggcacaaactgaacagggagatatattcaaaataaccattgaaactgatgatgac
atggtgacagaaatcaaactgaaatattttgacacagtaccagttgccacatccatgtgt
gttttgaaaactggtttcctgtttgtggcctgcgagtttggtaaccatttcctgtatcaa
attgctcatctgggagatgaagatgatgaaccagagttcagctctgccatgcctttagaa
gaaggagatacattcttctttgcaccaaggcccttgagaaatttggttttggttgatgaa
ctagattcactgtcaccaatattagcctgccatgtagcagatttggctggagaagataca
ccccaggtatatttagcctgtggacgcgggcccagatcttccatcagggcattgagacat
ggactcgaagtggcagagatggctgtatcagagttgcctggctcccctaatgctgtgtgg
actgtccgcaggcacaaagatgaggaatatgattcttacatcattgtgtcattcgtaaac
gccacgctcgtgctctctatcggtgagacagtcgaggaagtcacggactctgggttcttg
gggacgacgcccaccctgagctgtcacgctctcggaaacgatgctttggtgcaagtgtac
ccggacggcatccgacacatccgcgccgacaagcgggtaaacgagtggaaggcgccggga
aagaaatccatcgtaaaatgcgccgtcaatcaaagacaagtagtgatagcattgactggt
ggtgaacttgtctattttgaaatggatcctactggacaactcaatgaatacacagaaaga
aaaaagctgtcgtctgatgtatcgtgtatggcgttaggttctgtagctactggagaacag
agggcatggtttttagctgtaggcttgaatgacaacactgtcagaatcatctctttagat
ccatcggattgcctatcaccacgatcaatgcaagccctgcctgccggtgcagaatcttta
tgtattgttgaacaacctttcgaatccggcgcgaaatcagccttgcatcttaacattggc
ttgagcaatggcgtgttgctgagaactacgctagattctgtcagtggcgacctagcggat
actagaacaagatatcttggctcaaggcctgtgaaattgttcaaagtcagggtgcaagga
acagaagcagtgttagctgtgtcctcccgaacatggcttggttaccattatcaaaatcgt
ttccatcttactcctctgtcatatgaatgtctggagtatgctgcaggatttagttcagaa
caatgtgctgaaggtatagtcgctatttcatcaaacacgctgagaattctagccctagaa
aaactgggtgcagtgttcaaccagacatacttgccactagagtacacccctagaaaattc
gtgataaattcagacaacaatcatattattattttggagactgaccacaattcttacact
gaagaaatgaaaaaacaaagaagggttcaaatggcacaagaaatgcgcgaagcggccgcg
ggcggtgggccagaagagcaacaacttgctaacgaaatggctgatgctttcctttctgat
atattaccagaaaatttattttcatcacctaaagctggagcaggtatgtgggcgtcacaa
atccgcgtggtagacatgggcatcggcggcgggcagcccagcactctgttcaagttgccg
ctggagcagaacgaggcggccgtgtccatgtgcctcgtccgctgggccgcgcacggggaa
cacgccaggccgcatctcgtcgtaggagtcgcgaaagacgccattttgtcgcctagatcc
tgcacggaaggaagtttacatgtgtataagatatatggcagcacaggaaaattggagttg
gttcacaaaactccaatagatgaataccctggtgcgctggcaacgttcaacggtaaacta
gtggcaggagtcggccgcatgttgcgtctctacgacatcgggcggcggaaactgctgcgg
aaatgtgaaaacaggcacattcccaacctcattgcagacatcaaaaccattggacagaga
atcttcgtatcggacgttcaggaatcagtattatgtgtcaagtacaaaaagagagaaaat
caattgattatctttgcagacgacacaaatccaagatggattacaaacacgactatttta
gattacgacactatagcaatggctgacaagtttggtaacattgccatcatgagactgcct
cagtctatatctgatgatgttgatgaggatcctacaggaaacaaagctctatgggacaga
ggtttgctcaacggggcgtcgcaaaaaggggaaatagttgttaacttccacattggtgag
acagtgacttcattacaaagggcgacgctgattcctggtggatctgaagctcttttgtac
gcgacggtcagcggctctctcggagtaatgcttccgttcacatcgagggaagaccacgat
ttcttccaacatttggaaatgcacatgagaagtgaaaatccgccgctgtgtgggcgcgac
cacttgtcgtttagaagttactattacccagtcaagaatgtgatagatggtgatctctgc
gagcagtttaactccttggacacagataagcaaaaagcaatcgctggcgacttggaaaga
acgccggcagaagtgtcaaagaaactagaagacataagaaccagatatgcattttag

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