Amyelois transitella (navel orangeworm): 106135714
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Entry
106135714 CDS
T09957
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106135714
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106135714
BRITE hierarchy
Motif
Pfam:
GBP
RsgA_GTPase
KAP_NTPase
ABC_tran
AAA_18
AAA_22
Motif
Other DBs
NCBI-GeneID:
106135714
NCBI-ProteinID:
XP_013191537
EnsemblRapid:
LOC106135714
LinkDB
All DBs
Position
15:join(2511549..2511584,2511907..2512141,2512640..2512771,2513074..2513319,2514339..2514555,2515349..2515525,2517350..2517516,2517919..2518121)
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AA seq
470 aa
AA seq
DB search
MSEKKKKVLPSKETTPRRPVILKSDREAKELPKEKEKEKPPTIILKTREQSNPKDERPQS
PKAIKTPMAEGDGPHPCKIAQNENKEKKQPEKICHPLKQMSEPIKLLDENLEFNNAALEF
LHDASTNYLVVGVVGTQGVGKSMILNLIEQNKHTQDLCRKIRQVHELNEGNESNEVANIE
NQFKTLGVSETATMSNGFKFKMQDIQQIERGVHCTRGVDMYVTQDRVILLDCQALCSPSL
IEESNSNPITARSANVVTVDCLQVTSFLMAICHVLVAVQDWFADYNFIRYIQAAEMLKPS
LSASNPLNQEPSECNPSSSSPHLLLLHNRCQLEDFTPSAVRTMQELYTKAFQRSNLQLNS
GMYMYSDSNKNGLNVDNVCKAYSVEACGTPVNLFLLPEIYDDFDNRDIYRGHPPFEQLAK
RLRWIILGVNRHQITNVPNLSEKGWFHYCNKAWETIRKCTFFMEYERFLP
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaaaaaaaagaaagtcttacccagtaaggaaacgacgccacggcggccagta
attttaaaatctgaccgggaagcaaaagagctaccaaaggagaaggaaaaagagaaaccg
cctacaataattctcaaaactcgagaacagagcaaccccaaagatgagagacctcagagc
cccaaggccattaaaactcctatggctgaaggtgacggtccacatccatgtaaaatagcc
caaaatgaaaataaggaaaagaagcagcctgaaaaaatatgccatccattgaagcagatg
tcggagcctataaaacttctggatgaaaacttggagttcaacaatgctgcacttgagttc
ctccatgatgccagcaccaattatcttgttgtaggtgttgttggtacgcaaggtgtcggc
aaatcaatgatactgaacttgatagaacagaacaaacacacacaggacctttgcaggaaa
atcaggcaggtgcatgaactgaacgaaggcaacgaatcaaatgaagttgcaaatattgag
aaccagtttaaaacattaggtgtatcggagactgcgacaatgtcaaatgggtttaagttc
aagatgcaagatatacagcagatcgagagaggagttcactgcacaagaggagttgacatg
tacgtgacccaagatcgagtcatcctgcttgactgccaagctttatgttctccgtcactg
atcgaagaatccaatagcaatcccataacagctcggagtgctaatgtggtgacggtggat
tgtctgcaagtgacgtcattcctgatggctatatgtcatgtgttggtcgctgtgcaggac
tggttcgcggattacaactttatcagatacatccaagcagctgagatgctcaaaccgtca
ctgtcggcttcgaacccgctcaatcaggagccgtcggaatgcaacccgtcctcgtccagt
ccacacttgttgctgctacacaaccgctgccagttggaggacttcacgccaagcgccgtc
agaactatgcaggaattgtacacaaaggcgtttcagagatcgaatctgcagcttaactcc
ggaatgtatatgtacagcgattcaaacaaaaacggtttgaacgttgacaacgtgtgcaag
gcctacagcgtcgaggcgtgcgggacgcctgtcaacttgttcctgttgcccgagatctat
gatgactttgataaccgtgatatctatcgtggccacccgcccttcgagcaactggccaag
cgtctgcgctggatcatactcggcgtgaaccggcatcaaattaccaacgtgccgaaccta
tctgaaaaggggtggttccattactgcaacaaagcctgggagaccatacggaagtgtacc
ttcttcatggaatacgaaaggttcttaccatga
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