Amyelois transitella (navel orangeworm): 106136194
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Entry
106136194 CDS
T09957
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
atra03015
mRNA surveillance pathway
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106136194
09122 Translation
03013 Nucleocytoplasmic transport
106136194
03015 mRNA surveillance pathway
106136194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106136194
03041 Spliceosome [BR:
atra03041
]
106136194
03009 Ribosome biogenesis [BR:
atra03009
]
106136194
03012 Translation factors [BR:
atra03012
]
106136194
Enzymes [BR:
atra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106136194
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106136194
mRNA cycle factors
Stress granule specific factors
106136194
Spliceosome [BR:
atra03041
]
Complex C
Other components
EJC/TREX
106136194
Ribosome biogenesis [BR:
atra03009
]
Eukaryotic type
90S particles
Helicases
106136194
Translation factors [BR:
atra03012
]
Eukaryotic type
Initiation factors
eIF-4
106136194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Cas3-like_C_2
TniB
UvrD-helicase
Utp25_C
AAA_30
CMS1
Motif
Other DBs
NCBI-GeneID:
106136194
NCBI-ProteinID:
XP_013192117
LinkDB
All DBs
Position
18:join(3019284..3019434,3021467..3021802,3022068..3022290,3022668..3022922,3023300..3023552)
Genome browser
AA seq
405 aa
AA seq
DB search
MTSSEVSFNRKIISEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQ
RSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLILSPTRELATQIQKVI
LALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIKRRVLRTRSIKMLVL
DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDEL
TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTQKMQEANFTVSS
MHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG
RSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgtcggaggtgtcgtttaatcgcaaaataatatcagaggacctgtcgaatgtg
gaattcgacacgagcgaggatgtagaagttattccaacatttgattccatgggtcttcgt
gatgagttattacggggaatttatacatatggatttgagaagccttcagcaatccagcag
cgaagtattctacctattgtgaagggtagagatgtgattgcacaagctcagtctggtaca
ggcaaaacggctacattctcaatttccatacttcagtctttagacacgacactgcgtgaa
acacaagttttgatattgtctcctacacgtgagctggccacgcaaattcagaaggtcatc
ctggcgctgggagacttcatgaatgtccagtgtcatgcatgcattggtggcacaaatctt
ggagaagacataaggaagttggattatgggcagcatgttgtgtctggcacacctggcaga
gtgtttgacatgatcaaaagacgtgtgctacggacgaggtcaatcaaaatgctagtgctt
gatgaagctgatgagatgctcaacaaaggtttcaaagagcagatctatgatgtgtaccgc
tacctacctccagcgacacaggttgtgctcatctcggccacattgccccatgaaatcctt
gaaatgacttcgaagttcatgacagacccaatcaggatccttgtaaaacgtgacgagttg
acacttgaaggcatcaagcagttctttgtagcagtagaacgagaggaatggaagttcgac
actctgtgtgacctctatgacacgctgaccatcacgcaagcagtaatattttgcaacacc
aagcggaaggtggactggctgacacagaagatgcaagaggctaattttacagtcagctcg
atgcatggtgatatgccacagaaggagagagacaatatcatgaaagagtttagatctgga
caaagtcgtgttctcatcacaacagacgtatgggcgcgcggtatcgacgtgcagcaagtc
tccctggtcatcaactacgacctgccgaacaaccgcgagctgtacatccacaggatcggc
cgctccggacgcttcggccgcaagggcgttgccatcaactttgtcaaatccgacgacatc
agaatcctgagagacatcgaacagtattactccactcagatagacgagatgccaatgaat
gttgccgatctgatttaa
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