Amyelois transitella (navel orangeworm): 106136413
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Entry
106136413 CDS
T09957
Name
(RefSeq) WD repeat-containing protein 36
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106136413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atra03009
]
106136413
Ribosome biogenesis [BR:
atra03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106136413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
PEP5_VPS11_N
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR75_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_RIG_1st
DUF697
Motif
Other DBs
NCBI-GeneID:
106136413
NCBI-ProteinID:
XP_013192415
LinkDB
All DBs
Position
10:complement(join(6450958..6451658,6452192..6452351,6452816..6452894,6458501..6458696,6459157..6459342,6459695..6459931,6460251..6460420,6460697..6461640))
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AA seq
890 aa
AA seq
DB search
MSEQSSSRIFTGSRVLGYVSTHVPFVARYIRRRGETLLCTSVGKWFHTYGCDKFRLLSVS
GEHPGPITCMAGDNYHVYTASENNIYAWRRGCELKHVYKGHEAPIHLLFPFAAHLISIDE
GNILKIFDIKDETEFLELNFDESQFKITTMCHPPTYLNKILLGSRQGQLQLWNIRTSKLV
HTFEKWKSPVTVIEPAPAVDVVAIAFGNNKIVLHNLRYDETIVEFVHDWGKVTCLSFRMD
GAPVMVSGSTTGHIVMWDLEERRVMSQVQSAHSSRIAGMQCLMSEPLMVTNSRDNSLKLW
IFDMPDGGARLLRKREGHSLPPTLVRHCEPTGENILAAGADRSLHIMNTVTETFNKNMGK
GSYDRKKSKKKKRFEQDRLALPPIMKLSSCMQRDKQWDSIAALHSGMYIATTWSYNRICM
GQHKLKPDGFEKGTEATCLTVTHCGNFVVIGYSNGQVHKFNMQSGLHRGFYGKEDKRIAH
KGAVRGVETDLCNQRVITAGADDTVKFWHFKAATTPYHVIRLEESVALTKCHRESGLLAL
ANEDFSITLIDIDTMNVVRKFGGHCNRINDIAFDAQSRWLISTSMDCTVCTWDIPSSQLV
DIFSVERPCTSLSMSPTGDFLATTHVGELGVFLWANRLLYERVFLKPIDRADSVPTLRLP
ATVPEKPDIEDIGLIDLGEEPEYKSPEQISEELITLSDQPTSRWLNLLHLDVVKKRNKPK
TPLTVPKSAPFFLPTIPSLELEFDLEKDKDDKNTKLLIPESLSTLTVFAKKLVASEDSKD
YLQCIERLKTLSPAAIEAEVTSMAPDSGGSVEVMRHFLEMVNVMMTSNRDFELAQSYLSL
FLKMHTKLVASDEGLRNTLLSVEETAAQSWSKLQSQLLYNICVVKALKDM
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacagtcgagtagtcgaatatttacaggatcgcgagttctaggttatgttagt
acacatgtgccttttgttgcaagatatatcagaagacgaggagaaaccttgttatgtacc
agtgtaggaaagtggtttcatacctatgggtgcgacaagtttcgtctgctgagcgtgagt
ggtgaacatccaggccccataacatgtatggccggcgacaattaccacgtttatacagct
agtgagaacaacatttatgcatggagacgaggatgtgagctaaaacacgtttacaaaggt
catgaagcgcccattcatttgctctttccttttgctgcccatcttatttcaatagatgaa
ggcaacatattaaaaatcttcgatatcaaagatgagacagagtttctggagctgaatttt
gacgaaagtcagtttaaaattaccacaatgtgtcatccacctacatatctaaataaaata
ttgcttggaagtcgacaaggacagttacagttatggaatatccgaacttctaaattagtc
catacttttgagaaatggaagtctccagtgactgttatagagccagctccggctgtggat
gttgtggctatagcttttggtaacaacaagatagtgcttcataatttacgctatgatgaa
acaattgttgaatttgttcatgattggggcaaagtgacatgtttgtcatttagaatggat
ggtgcaccagtgatggtgtcaggaagcactacaggtcacattgtgatgtgggacttggaa
gagagaagggtaatgtcacaagtgcaatcggcccactcatctcggatagctggtatgcag
tgcttgatgtcagagcccttgatggtgaccaattcaagagataactcattgaaattgtgg
atctttgacatgcccgatggtggtgcaagactgttacgtaaaagggaaggccattcatta
ccaccaaccctagtgcggcactgtgaaccaacaggagaaaatatcttggctgctggagca
gacagaagtcttcacattatgaatacagttacggaaacattcaacaaaaatatgggaaaa
ggatcttacgacagaaagaaatctaaaaaaaaaaagaggttcgaacaagatcggttagca
ctaccgccaatcatgaaactcagttcatgcatgcaaagagacaaacagtgggacagcata
gcagccttacacagcggcatgtacatagccaccacatggtcatacaaccggatatgtatg
ggacagcataaactcaagccagatgggtttgagaagggaaccgaggcaacatgcttgact
gtgacacattgtgggaattttgtggttataggttacagcaatggacaagtacacaaattt
aacatgcaatctggattgcatagaggattttatggtaaagaagataagagaatagcacat
aagggcgcagtgaggggtgtggagactgacttgtgtaaccaaagagtaataactgctggt
gctgatgataccgtcaaattctggcacttcaaagcagctaccacaccttatcatgtcatc
cggttagaagaatctgttgcccttacaaaatgccacagggaaagtggattacttgcttta
gcaaatgaagatttctcaataactctcattgatattgacacaatgaatgttgtaaggaaa
tttggaggccattgcaatagaattaatgatatcgcttttgatgctcagagcaggtggcta
attagcacttcaatggactgcactgtttgcacctgggacataccgagctcgcaactcgtg
gatatattttcggtggaaagaccatgcacttcgctcagcatgtctcctactggagacttc
cttgccacgacacatgtcggggaactaggagtgttcctctgggccaatagacttttgtat
gaacgagttttcctcaaacccatagacagggccgattccgtcccaacattgcgtctacca
gctacagttccagagaaacctgacatcgaagacattggcctcattgaccttggagaagaa
ccggagtacaaatctcccgaacaaataagcgaagagctcatcacactttcagaccagcca
acttcaagatggctaaatttattgcatcttgatgtagttaaaaagagaaataaaccaaaa
acacctctgacagttcctaaatctgcaccgttcttcttaccaactattccaagtctcgag
ttagaatttgatttggaaaaagataaggatgacaaaaatacgaagttgctaataccagag
tcattatctactttaacagtatttgctaagaagttagtagcgagtgaggatagtaaagat
tatttacaatgtatagaaaggttgaaaacgctttctccggcagccattgaggctgaagta
acaagcatggctcccgactcgggcggttccgttgaggttatgcgtcattttcttgaaatg
gtcaatgtaatgatgactagcaatagagattttgaattagctcagtcgtatttaagttta
tttttaaaaatgcatacgaagttggtagcgtcggatgagggtttgagaaatactctactg
tcggtagaagagaccgctgcgcaatcgtggtctaagttgcaaagtcagttgttgtataat
atttgtgttgttaaagccttaaaagatatgtaa
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