KEGG   Amyelois transitella (navel orangeworm): 106136486
Entry
106136486         CDS       T09957                                 
Name
(RefSeq) DNA mismatch repair protein Msh2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    106136486
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atra03400]
    106136486
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     106136486
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II Syntaxin-18_N
Other DBs
NCBI-GeneID: 106136486
NCBI-ProteinID: XP_060801503
LinkDB
Position
8:complement(join(6167443..6167661,6169412..6169637,6170184..6170275,6171407..6171639,6172644..6172862,6173403..6173587,6173965..6174139,6174728..6174887,6175310..6175517,6175899..6176057,6176822..6177057,6177835..6177987,6178189..6178380,6179028..6179222,6186188..6186237,6187555..6187591))
AA seq 912 aa
MSALQPIHALSLDSVQQQAFIKYYHGLPEKPPTTVRIFDRNDYYSVHGVDATTAAREVFS
SVSNIKKMGIEPNKLDYLVLSKGNFETLIKKLLLVRRYRVEIYVAEGSVKSNDWVLRYKG
SPGCLSQLEEVLGEGLGVSEENAQCLMAVNIKTDTMTKGRLLGVACVSVYEYQLSVSEFT
DDDLLTGLETIVVQMAPSECLVPLSDNDDYKALKKVMDRASVTLTKLKKSEFSTEGLIQD
LNRLLKFKENQTQDANAFPETRNDTAMTSLAAAVKYMSLLSDNTNFGRFRINTIQSDCFL
HLDAAALSALNVFPELGDNSHSPSRSLFGLLDRCRTQHGKRLLAQWLRQPLRDINLINER
LDIVELLVNSSQLRLQLYDDHLRRIPDLQALARRLTRKKANLHDCYKIYQAIKRLPALLQ
CLAEADHATVHSALSEPISELNGDLDKFQQMIETTIDMDAVDRGDFLVKPSFDEQLQSLS
EQLEQYQSAAEKELNKAARDLGLDAGKSIKLEINPQNGFYFRVTMKDEQNLRGNKKYTII
DAVKGGVRFKTNALENITEDYVNAKSTYEKEQDKVVAEIVSIAAGYSECLSCLSQILSRL
DVLVSFAVAASSAPHPYCRPVLTESLDEFILKDVRHPCLEVQEGVSYIPNDVVFKRGVGT
THIVTGANMGGKSTWMRSCGVAALLAHAGCVVPARRAALPRLRAVAARVGAADREDRGQS
TFMLEMIETAAILRTATPDSLVLVDELGRGTSTYEGCGIAWAIAEELANKSKCFCLFATH
YHSLTRLASLHPGVIVNSHAEASVVDQQLVLLHRISPGPALQSLGIHVAKLADLPDSVIE
YAEEKQAQLETNLYELETEETLEGQKLVTDFLRKCKELNESIQSDDEMMKEIRKLKQDLL
KRNNKYVQSVIA
NT seq 2739 nt   +upstreamnt  +downstreamnt
atgtcagcattacaacctatacatgctctgagtttggattctgttcagcaacaagcattc
ataaagtactaccatggactacctgaaaaaccaccaaccacagtgagaatatttgatcgc
aatgactactacagtgtccatggcgtggacgccaccaccgctgcaagagaggtgttttcc
tctgtctccaatatcaaaaaaatggggatcgagcctaataaattggattacctggtgctc
tctaaaggaaacttcgaaacactcattaagaaactattgttggtgagacggtacagagta
gaaatatacgtagcagagggttcagtaaagagcaacgattgggtgcttagatacaaaggg
tcgcctggctgtttgtctcagttagaagaggttttaggagagggtctcggggtttctgag
gaaaatgcccagtgcttgatggcagtgaatataaagacggatacgatgaccaagggtcgt
cttctaggcgtcgcgtgtgtatcagtgtacgagtaccagttatcagtatcggagttcacc
gacgatgacctgctgacggggctggagacgatcgtggtgcaaatggcgccttcggagtgc
ctcgtaccccttagcgataacgatgactataaagcgctcaaaaaagtaatggaccgagcg
agtgtgacattgactaaattgaaaaagagcgagttttccaccgaaggtctgatccaggac
ctcaatcgcctcctcaagtttaaagagaatcaaactcaggacgccaacgcttttccagaa
acgaggaatgacacagctatgactagtctagctgcggccgtcaaatatatgtcattgttg
tcagacaatactaacttcggcaggttccgcataaacacgatccaaagcgattgtttccta
caccttgacgcggcggctttgtcagcactgaatgttttcccagagttgggagataacagc
cattctccttcgcgaagcttgtttggtctgcttgataggtgcaggactcaacatggaaag
agacttttggcccaatggcttcgtcagcctctccgcgacataaacctgataaacgagcgt
ctagacatcgtggaattgttggtgaacagttctcagttgaggctgcagttatatgatgat
catctcagaaggataccggatttgcaggctttggccaggcggttgacgaggaagaaggct
aatctacatgactgctataaaatatatcaggctatcaaaagacttccagcactactacaa
tgtctggccgaagctgatcatgcaactgttcactccgctctctccgaaccaatatcagag
ttgaacggagaccttgacaagtttcaacaaatgatcgaaaccacgattgatatggacgct
gtagacagaggagacttcctcgtaaagccatccttcgacgaacaacttcagagtttgagt
gaacaactagaacaatatcaatctgctgccgagaaagagttgaacaaagccgcgcgagat
ttaggtttggatgcaggaaaatctatcaagctggagattaacccacaaaatggcttctac
tttagagtgacaatgaaagacgagcaaaatcttcgcggcaacaagaagtatacaattata
gacgctgttaaagggggcgtaaggttcaaaactaatgcactggaaaatataacggaagat
tacgtgaatgcgaaatctacgtacgaaaaggaacaagataaagttgtggctgaaatcgtt
tccatcgccgctggatactcggaatgtctgtcgtgtctatctcagatattatctcgacta
gacgttctagtttcttttgctgtagcagcttcttccgccccccacccatactgccggcct
gttctcactgaaagcttggatgaattcattttgaaagatgtccgtcatccgtgtttagaa
gtgcaagaaggagtgtcgtatattcccaatgatgttgtgtttaaacgaggtgtaggcaca
acgcacatagtgacaggcgcgaacatgggcgggaaatctacttggatgcggtcatgcggc
gtggcggcgctgctggcgcacgccggctgcgtggtgcccgcgcgccgcgccgcgctgccg
cgcctgcgcgccgtggcggcccgcgtgggcgccgccgaccgcgaggaccgcggccagagc
acttttatgctggaaatgatcgagactgcggccatactgaggaccgcaacacctgattca
ctagtattggttgatgaactcgggagaggaacatccacttacgagggctgcggcatagct
tgggctattgcagaagaactcgcgaacaaaagcaaatgtttctgcctattcgcaacccac
taccactcgttgactcgcctcgcgtccttacatcctggtgtgattgtgaactcccacgca
gaagcctcggttgtggaccaacaactcgtgttgttgcacagaatatcgccaggacccgcc
ttgcagtccctggggatacacgtggctaagttggctgaccttccggactcggttatcgag
tatgcagaagagaagcaagcgcaacttgaaacgaatctgtacgaattggagacagaagaa
actttggaaggacagaaacttgtcacggattttttgcgaaaatgcaaagaattaaatgaa
tcgatccaatccgacgatgaaatgatgaaggaaataagaaaattgaaacaggacttactg
aaacgaaataataagtacgtccaatctgtgattgcataa

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