Amyelois transitella (navel orangeworm): 106136487
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Entry
106136487 CDS
T09957
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03008
Ribosome biogenesis in eukaryotes
atra03013
Nucleocytoplasmic transport
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106136487
03015 mRNA surveillance pathway
106136487
03008 Ribosome biogenesis in eukaryotes
106136487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106136487
03009 Ribosome biogenesis [BR:
atra03009
]
106136487
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106136487
mRNA cycle factors
Stress granule specific factors
106136487
Ribosome biogenesis [BR:
atra03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
106136487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
TAP_C
Tap-RNA_bind
NTF2
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
106136487
NCBI-ProteinID:
XP_013192505
LinkDB
All DBs
Position
15:join(1028233..1028302,1028409..1029020,1029833..1030023,1030504..1030613,1032616..1032652,1033325..1033575,1034003..1034171,1034751..1034915,1035523..1035674,1036089..1036188)
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AA seq
618 aa
AA seq
DB search
MPKRGGGRRDDGRNWKRYENDHFEHDDRGHSNNTRRVSFKPGTNKGKNKFRTWNDPKLLL
DDDIDMSGGPMHGQGQGRKGAFRGRGGKRIISPAAGGPRGGPKKKFIAGLLPWYQIVIPY
GAKHEKDVILKALLGYISPEIFIPHYYKVNGNSSIFYVDDVKIAEKLFYADRKIVMSDGF
KLVVIVRNAAPTVTIDAEMKEKMKTAMVKRYNAATKALDLTKFHADPELQDIFCALFRPM
IMLAVIDIIAEHIPDLEALNLNDNKLHGMEHLKILSTKFKLLKILYLGDNRIPSIASLEP
LKSLQLVELYLKGNPLVNRFNDHDTYISDVRKRFPKLMRLDGVDLPPAIGFDVAETATLP
PRQQSFLVDPAGQDLVREFLTQYFAIYDSDTRQPLLEAYHEHATMSMAANYLSHDNNRYS
PSSRLTSYISSSRNIIKVSERESRRRYLKTGRLQVVSFLSELPKTKHDLMGFAVDLLVFT
PTMIVLSMNGLFKETATSGNPNRSFHRTFVIVPNAGGGFCVINDMLFITNPVEEQEEKAF
STGVPPAAPAPSPAAAPPAPVADDPQKLMLNMLGQQTGMNEHWSINCLQETGWDFQRALF
IFNQLQSEGKIPPEAFVK
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaacgcggaggaggtagaagagatgatggtagaaattggaagagatacgaaaat
gaccattttgaacatgatgacagaggtcattccaacaataccaggcgtgttagcttcaaa
cctggaacaaataaagggaaaaacaagttccgtacatggaatgatcctaaactattgctt
gatgatgacattgatatgtctgggggtcccatgcatggtcaagggcaagggaggaaagga
gcatttagaggcagaggagggaaacgcatcatttcaccagcagctggcggtccaagagga
gggcctaagaagaagttcatagcggggctactgccatggtaccaaatcgttataccttac
ggcgcaaaacatgagaaagatgttattcttaaagcattgttaggttacatatcaccagag
atcttcattccccattattacaaagtgaacggcaattcgtctatattttatgtggacgat
gtgaaaattgccgaaaaactgttttatgcagacagaaagattgtgatgtctgatggcttc
aagttggtagtcattgtccgtaatgcggcaccaacagttacaattgatgccgagatgaag
gaaaagatgaagactgcaatggttaagagatacaatgctgcgacaaaagctctggattta
acgaagttccacgctgaccctgagctgcaagacatattctgtgctctcttccggcccatg
ataatgttggccgtgattgacatcattgcggaacacatcccggacctcgaggctttgaac
cttaacgataacaagttacatggcatggagcatctgaagattctctcaacgaagttcaag
ctgttgaagattctgtacctgggtgacaataggataccatcaatcgcttccctggagccc
ctgaaatccctgcaacttgtggagctgtacctcaaagggaaccccctcgtgaacaggttt
aacgaccatgacacatacatcagcgatgtgcggaagaggttccccaagctgatgcgactg
gacggcgtggacctacctccggctatcgggttcgacgtggcagaaaccgccactctgccc
cctcgccagcagtccttcctcgtggacccggccggccaggacctggtcagggaattcctc
acgcagtacttcgctatatacgactctgacacgcggcaaccattgctcgaggcgtaccat
gaacacgcaacaatgtctatggcggcgaattacttgagccacgacaataacagatactcg
ccgtcgtctaggctgacctcatacatatcgagcagtcgcaacataatcaaggtatctgaa
agggagtccaggagaaggtacctgaagaccgggaggctgcaagtggtgtcgttcctctcc
gagttgcctaagaccaaacatgatttgatgggatttgcggtcgatttactagtttttacg
cccaccatgatagtgctgtcgatgaacggcctcttcaaagagaccgcgacgtcggggaat
cccaaccggtctttccaccgcaccttcgtgatcgttcccaacgccggtggcgggttctgc
gtcatcaacgatatgctgttcatcactaatcctgttgaagaacaggaagagaaagcattc
tcgacgggggttccccccgcggcgcccgccccctccccggccgccgcgccccccgcgccc
gtcgcagacgacccgcagaagctgatgctgaacatgctggggcagcagaccggcatgaac
gaacattggagcatcaattgtttgcaagagaccggctgggatttccaacgggcattgttc
atcttcaaccagctccaatcggaaggcaaaataccgcccgaggcgttcgtcaagtga
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