Amyelois transitella (navel orangeworm): 106137016
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Entry
106137016 CDS
T09957
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03030
DNA replication
atra03410
Base excision repair
atra03420
Nucleotide excision repair
atra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106137016
03410 Base excision repair
106137016
03420 Nucleotide excision repair
106137016
03430 Mismatch repair
106137016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atra03032
]
106137016
03036 Chromosome and associated proteins [BR:
atra03036
]
106137016
03400 DNA repair and recombination proteins [BR:
atra03400
]
106137016
DNA replication proteins [BR:
atra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
106137016
DNA Replication Termination Factors
ELG1-RFC complex
106137016
Chromosome and associated proteins [BR:
atra03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
106137016
DNA repair and recombination proteins [BR:
atra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
106137016
Check point factors
HRAD17(Rad24)-RFC complex
106137016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
RCF1-5-like_lid
AAA_30
AAA_16
AAA_22
Gp44_lid
Mg_chelatase
RuvB_N
AAA_24
AAA_11
Rad17
bpMoxR
SLFN-g3_helicase
AAA_19
AAA_3
AAA_lid_RFC1
Viral_helicase1
DUF815
AAA_assoc_2
AAA_5
DUF3373
AAA_25
Motif
Other DBs
NCBI-GeneID:
106137016
NCBI-ProteinID:
XP_013193202
LinkDB
All DBs
Position
4:join(8933829..8933938,8934253..8934528,8934754..8934972,8935656..8935815,8936094..8936176,8936610..8936817)
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AA seq
351 aa
AA seq
DB search
MQAFLKTGKISAADKPSSSGVKTTSKKKPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLS
GGDLPHLLFYGPPGTGKTSAILAAARQLFGDITRDRVLELNASDERGIQVVRDKVKTFAQ
MTVSSTKPDGQPCPPYKLVILDEADSMTNAAQAALRRTMERETRTTRFCLICNYVSRIIP
PITSRCSKFRFKPLARDNVIKRLREICEAEGVDVGEGEVLHKAVDTCEGDLRRALTALQC
CQRLLGKITDEGLIEVTGLVPEKLVNEYLSVNNYSELEKFVENFLMEAYSASQLLEQLSA
TVITAGHLTNKQKCVISEKLAVCSHRLLDGGAEFMQLTDLGCTIIMANNNP
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcctttcttaaaactggtaaaatatcagcggcagacaaaccttcatcgtctggc
gtaaagaccacctccaaaaagaaaccacctgcaccatgggttgaaaaataccggccgaaa
acaattgatgatattgtagaccaaggagaagtggtgcaagtactgagagagtgcttgtca
ggtggcgatttgccacatcttttgttttatggacctccaggcacaggaaaaacaagtgca
atccttgcagcggcacgacaactgtttggagatattacaagagatagagttctagaattg
aatgcatcagatgaacgaggtattcaagttgttagagataaagtgaaaacctttgcacag
atgactgtcagcagtacaaagcctgatggtcaaccatgtcctccatacaaacttgttatt
ctggacgaggcagattccatgacaaatgctgcccaagctgcccttcgccgcacaatggag
cgtgagactcggaccacccgtttctgcctgatttgcaattatgtctcgaggatcatccct
ccaattaccagcagatgttccaaatttagatttaaaccactggctagagacaatgttatc
aaaagattgcgtgagatctgtgaagcagaaggagtagatgtgggcgagggcgaggttttg
cataaagcagttgatacttgtgaaggagacctgcgacgtgccctgactgcattgcagtgc
tgccagcggttgctggggaaaataacagatgaaggtctcattgaggtgactggtttagtg
cctgagaaactggtgaatgagtaccttagtgtcaataattatagcgaactcgagaagttt
gtggaaaatttcctaatggaagcgtactccgcctctcaactgctggaacaactgagcgca
acggtcatcaccgcggggcacctcaccaacaagcagaaatgcgtcatcagcgaaaagctg
gctgtttgctctcatcgcctactagatggcggcgctgagttcatgcaactaacagacctg
ggctgtaccattatcatggcgaataataacccttaa
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integrated database retrieval system
