Amyelois transitella (navel orangeworm): 106137097
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Entry
106137097 CDS
T09957
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03082
ATP-dependent chromatin remodeling
atra03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106137097
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106137097
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
atra01009
]
106137097
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atra03021
]
106137097
03036 Chromosome and associated proteins [BR:
atra03036
]
106137097
Protein phosphatases and associated proteins [BR:
atra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106137097
Transcription machinery [BR:
atra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106137097
SWI/SNF complex
106137097
Chromosome and associated proteins [BR:
atra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106137097
PBAF complex
106137097
SWI/SNF complex
106137097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
106137097
NCBI-ProteinID:
XP_013193312
LinkDB
All DBs
Position
22:complement(join(3139573..3139664,3142111..3142249,3143057..3143233,3143851..3144062,3144840..3144987,3145357..3145519,3145817..3146007,3146410..3146490))
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AA seq
400 aa
AA seq
DB search
MALRTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMARRTLTNEERKRLV
DNGLGPHVLSSSVSLLKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKKPHNPSWLPV
MPNSSHLDAVPQATPISRTRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIRLDMEI
EGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIPAIATSIRQQIDAFPSEPPAI
LDEQSDQRVVIKLNIHVGNTSLVDQVEWDMSEKENNPEQFATKLCAELGLGGEFVTGIAY
SVRGQLGWHQRTYAFSEAPLPVVETPYRQPSEAEQWAPHLETLTNAEMEKKIRDQDRNTR
RMRRLANTTPDVSLSRAVNRLIRADEAMFQTTPEKRRKKI
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggcactaagaacttacggcgataagccaattagttttcaaatagaggagggtggagat
ttctactgtgttggatcagaggttggaaattacctgcgcctgttccgcgggtctctctac
aagaagtatcctggcatggccagaaggaccctcaccaatgaggagaggaaacgtcttgtt
gacaacggtctcggaccccatgttctgtccagctcagtgtcattgctgaaggcttcagaa
gttgaggacattattgaagggaatgatgataaatacaaagcagtgtcggtgagtcaggaa
ctggcgactcctcgagagagcaagagtaagaagccacacaacccatcatggctgccggtg
atgcccaactcatcccacttggatgctgttccccaggctacacctatcagtaggaccagg
gtgcataataaaaaggtccgtacattccctctatgcttcgatgacacggacatgacagcg
atgctggagaacgcttctcagaagcaggtgctcgtgcccatcagactcgacatggagatt
gagggacagaagctaagggacacattcacttggaataaaaatgaatcgataataacacca
gagcagtttgctgaagtattgtgtgatgacttggaactgaatacaagcacattcattccg
gctatagccacatctatcaggcaacagattgatgctttcccgagcgaaccgcctgccata
ttggacgagcagtccgaccagagagttgtcatcaagttgaacatccatgttgggaacact
tctttggtagatcaggtggaatgggacatgtccgaaaaagagaacaaccccgagcaattc
gcgacgaagctctgcgccgagttggggctcggcggggagttcgtgaccggcatcgcgtac
agcgtgcgcggccagctgggctggcaccagcggacgtacgccttcagcgaggcgccgctg
cccgttgtcgagacgccgtaccgccagccctcggaggccgagcaatgggcaccacacttg
gagacgctcaccaacgccgaaatggagaagaagattcgcgaccaggaccggaacacgagg
cgcatgcgacgtctcgccaacaccacacccgatgtatcgctgagtcgcgcagtcaaccga
ctgatacgggccgacgaagcgatgttccaaacgaccccggaaaagagaagaaaaaagatt
taa
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integrated database retrieval system
