KEGG T09957: 106137123

Amyelois transitella (navel orangeworm): 106137123

Entry

106137123         CDS       T09957

Name

(RefSeq) uncharacterized protein LOC106137123

K10643

CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]

Organism

atra Amyelois transitella (navel orangeworm)

Pathway

atra03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:atra00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106137123
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:atra03000]
    106137123
   03019 Messenger RNA biogenesis [BR:atra03019]
    106137123
   04121 Ubiquitin system [BR:atra04121]
    106137123
Enzymes [BR:atra01000]
2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106137123
Transcription factors [BR:atra03000]
Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    106137123
Messenger RNA biogenesis [BR:atra03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106137123
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106137123
Ubiquitin system [BR:atra04121]
Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106137123

SSDB

Motif

Pfam:

zf-RING_4 RRM_1 zf-RING_2 Baculo_IE-1 zf-C3HC4 zf-C3HC4_2 Nup35_RRM_2

Other DBs

NCBI-GeneID:

106137123

NCBI-ProteinID:

XP_060807460

LinkDB

Position

25:complement(join(3889718..3889840,3890413..3890531,3891325..3891419,3892145..3892288,3892667..3892836,3893479..3893981,3894360..3895028,3895137..3895264,3896030..3896099,3896504..3896545,3898057..3898188,3898574..3898763,3900115..3900201,3900664..3900813,3901313..3901426,3901913..3901987,3903359..3903391))

AA seq 947 aa
MSVLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENGLCPACRKAY
PENPADFTPLSQEQVAAIKTEKKAREQKRRNKTLESRRALANVRVVQNNLVFVVGLPVRL
ADPEILKRQEYFGKYGKIHKVVINQSTAYAGSQGPSASAYVTYVSPADALRAIQGVSNVA
LDGRVLKGSLGTTKYCANFMKNQPCPKPDCMYLHELGDPKASFTKEEMHAGLHQVYERKL
HNQLQQATRDTPTDKQYSSSGNSSTSAEKSSSKDGNQSNNSQAAAVTSPNINVVNSSKSK
KECNGVSESGAGGDKSGKEAWPSLAEPPAPASPAPAPAARNKSQENGTSESSSPTQLTQQ
AQTNTKSNKDHTDKTRSKDSTNPQPNKKSKSDKKKSNSINDEDKTEKHTQSSSTSTVFEA
DSHQYLTNELDELESDRHSLLENHDLLDNSEHNLLEDDTHSLLTDPNNDVMMMLRHKEMF
AGLVENNMAKPLNGYGLLDRDTISYLGNDRQISQKIPMGKVERDLRREEMLRQNEMLARQ
RALEHKHYLPAASIAMDSASEMLGANYHPNPSMLPPFGMRIDNSMGTSLGMNTMANMNTN
LANNMPSSLTNNIPNNLTSNLPNGLTNSLQNGMVNNMTNSLVNNMPNSLVNNMPSSLVNN
MPNSLANNMPNSLANNMPNSLVNNMSNLNNMQSNMNSIPAGFMMHNQMLGQQQQQQMQQN
ALVNGFDAPQSSEGRYLAENMDKFFTDFHKAQQRRLMLSREELEPQQPHMFARNMLSAER
LEMEHKQRMNNLRVGESSARAAGDGDDDLDFDPFKETQKALQEMMETEMMQGVSSGDNME
RVRRARLAPPGFGHLGLPQPRPVAHHAGYTSQQNSFSDWTQLDPAIVSTSVSRAKGAPQG
SLTHQQQELFAQFSQLSAGGWAPRFVPLPPGFAPAKRPLSKECIDAK

NT seq 2844 nt +upstreamnt +downstreamnt
atgtcagtactgaatcagagcggagaagagcaggtggaatgtcccctgtgtatggaaccc
ctggaagtggacgaccttcacttctacccgtgcacatgtggttatcaaatatgccggttt
tgctggaatcgtattcgggagggcgagaacggtctgtgcccggcgtgtcggaaggcctac
ccggagaaccccgcagacttcactccgctcagtcaggaacaggtggcagcgataaagacg
gagaagaaagcgcgcgagcagaaacggcggaacaagacgttggagtccagacgcgccctc
gccaacgtgagggtcgtacagaacaacctcgtgttcgtggtggggctccctgtgcggctg
gcggaccccgagatcctcaaacggcaagagtactttggaaaatacggaaaaatccacaaa
gtagttataaaccaaagtaccgcgtacgcaggctcacagggcccgtccgcgtccgcgtac
gtgacgtacgtgtcgccggcggacgcgctgcgcgccatccagggcgtcagcaacgtggcg
ctggacggccgcgtgctcaagggctcgctcggcaccaccaagtactgcgccaacttcatg
aagaaccagccctgccccaagcccgactgcatgtacctccacgagctaggtgatcctaaa
gcgtcgttcacgaaggaggagatgcacgcggggctgcaccaggtgtacgagcggaagttg
cacaaccagttgcagcaagccactcgcgacacgcccacagacaaacaatacagcagttca
ggtaattctagtacgagcgcagaaaaaagcagttcaaaagatggcaatcaatcaaataac
agtcaggcggcagcggtcacatcacctaatataaatgtagtcaattcatctaaatctaaa
aaggagtgtaacggcgtcagcgagagcggggcgggcggcgacaagagcggcaaggaggcg
tggcccagcctggccgagccgcccgcgcccgccagccccgcgcccgcccccgccgcccgc
aacaagtcacaagaaaacggcacatcagaatcttccagtcccacacaactcacacagcag
gctcaaacgaacacaaaaagcaacaaagaccacacggacaaaacgagaagcaaggacagc
acaaaccctcagcccaacaagaaaagtaaatccgacaagaagaaaagcaatagtattaac
gacgaagacaaaacagagaaacacacgcagagtagtagcactagcactgtattcgaggcc
gattcccaccagtacttgacgaacgaattggacgagttggagtcggacaggcacagcctt
ctcgagaaccacgacttattagataatagcgaacacaacctactagaggacgacacacac
agcctgctgacggaccccaataatgacgtcatgatgatgctcagacacaaggaaatgttc
gcgggcttagtcgagaacaacatggcgaaaccgctgaacggttacggtttattagacaga
gacacgatcagttatttaggtaatgataggcaaattagtcaaaaaattccgatgggcaaa
gtggagagggacctgagaagagaggagatgctgcggcagaacgagatgctggcgcggcag
cgcgccctggagcacaaacactacttgcccgccgccagtatagcgatggattccgctagt
gaaatgttaggtgctaattatcatccaaatcccagtatgcttccaccgttcggcatgcgc
atagacaattcaatgggcacaagtttaggcatgaacacaatggccaatatgaacaccaac
ctagccaacaatatgcccagcagtttgaccaacaatatacccaataatctgactagcaat
ctccctaatggcttgactaatagtcttcaaaatggtatggtgaataatatgacaaatagt
ttggtaaacaatatgccaaacagtttggtcaataatatgccaagcagtttggtcaataat
atgccaaacagtttggccaataatatgccaaacagtttggccaataatatgccaaatagt
ttggttaataatatgagcaatttgaataatatgcaaagcaatatgaatagtattccggcc
gggtttatgatgcacaatcaaatgttgggccaacaacaacaacaacagatgcaacagaat
gcactcgtcaacgggttcgatgcgccacagtctagcgaaggacgatatctcgctgagaac
atggataaattcttcacggacttccacaaagcgcagcagcgcaggctcatgctgtcgcgc
gaggagctggagccgcagcagccgcacatgttcgccaggaacatgctcagcgccgagaga
ctggagatggagcacaaacagagaatgaacaacctgcgagtgggcgagagcagcgcacgc
gccgccggcgacggggacgacgacctggacttcgaccccttcaaggagacgcagaaggcg
ctgcaggagatgatggagaccgagatgatgcagggcgtctccagcggcgacaacatggag
cgcgtgcggcgcgcgcgcctggcgccgcccggcttcggccacctcgggctgccgcagccg
cgccccgtcgcccaccacgcaggttacacatctcagcagaactcgttctccgactggacg
cagctggacccggccatcgtgtccacgtccgtcagcagagccaagggcgcgccacagggc
tcgctcacgcatcagcagcaggagctgttcgcgcagttcagccagctgtcggcgggcggc
tgggcgccgcgcttcgtgccgctgccgcccggcttcgcgcccgccaagcgcccgctgtcc
aaggagtgcatcgacgccaagtag

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