Amyelois transitella (navel orangeworm): 106137189
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Entry
106137189 CDS
T09957
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106137189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atra03041
]
106137189
Spliceosome [BR:
atra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106137189
Complex C
U5 SnRNP specific factors
106137189
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
DSE1_N
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
PAC11
Beta-prop_WDR41
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_RFWD3
NBCH_WD40
ANAPC4_WD40
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_NOL10_N
ASA1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SPT8
TRM82_WD
eIF2A
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Tricorn_2nd
Beta-prop_Nup120_160
Beta-prop_ACSF4
Beta-prop_Vps41
Beta-prop_pof12
Cytochrom_D1
Beta-prop_HPS5
KNTC1_N
DUF7899
Motif
Other DBs
NCBI-GeneID:
106137189
NCBI-ProteinID:
XP_013193433
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All DBs
Position
17:join(590025..590141,590233..590359,590945..591148,592177..592419,592921..593099,594221..594400)
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AA seq
349 aa
AA seq
DB search
MPELEIKRKAEEYSVVPSKRVRHEISVAGTREKAVVTSAVPRTSNLYAPIMLLEGHQGEI
FTAKFHPEGKHLASAGFDRQILLWNVYGQCENVMVMTGHTGAIMELCFSPDGAHLYTCAT
DNTVAVWDVPTGQRVKKLRGHASFVNSVSGARRGPELLVSASDDNTIKLWDARKRNPIAS
FDSTFPVTSVLFNDTAEKIISAGVDNVIKVWDIRNNQISYKIKGHTDTVTGMSLSYDGSY
LLSNSMDNTLRIWDVRPFAPSERCVKLMSGHQHNFEKNLLRCAWSPDGSKVAAGSSDRFL
YVWDTTSRRVLYKLPGHNGSVNDVDFHRTEPIVLSASSDKQIYLGEIDH
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattggaaataaaaagaaaagcggaagaatattccgtagtaccatctaaaagg
gtccgccatgaaatatctgttgctggcacaagagaaaaggctgtggttacttcagcggta
ccacgcacatctaatctatatgccccgataatgctcttagaagggcatcaaggagagatt
tttactgcaaaatttcatcctgaaggaaaacatttagcatccgcaggattcgatcggcag
atattgttatggaacgtatacgggcagtgcgagaacgtgatggtgatgaccggccacacg
ggggccatcatggagctctgcttctcaccagacggcgcccacctgtacacgtgcgccact
gacaacaccgtagccgtgtgggacgtgccgacaggacagcgcgtcaagaagctgaggggg
cacgctagctttgttaattctgtctcaggtgcacgaagagggccagaactcctagtttcc
gcatcagacgacaacaccataaaactctgggacgccaggaaacgcaacccaatagcttca
ttcgacagcacattcccggtcacatcggtgctgttcaacgacacagcggagaagatcata
tccgctggagtggacaacgttatcaaggtgtgggacatcaggaacaatcagatctcgtat
aagattaaggggcatacggatactgttacgggcatgtcactgtcatatgacggctcctac
ctcctgtcgaactctatggacaatacgcttcgcatttgggacgtccgcccgttcgcgcca
tcggaacgctgcgtcaagctaatgtcaggacatcaacataacttcgaaaagaacttgctc
agatgcgcgtggtcacctgatggatctaaggtggcggctgggtcttctgaccgtttcctg
tacgtttgggacaccacatcccgaagagtcctgtacaagttgcccggacacaacggatca
gtgaacgacgtagacttccaccggactgaacctattgtactctccgcttctagtgacaaa
caaatatatcttggagaaattgaccattag
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