KEGG   Amyelois transitella (navel orangeworm): 106137189
Entry
106137189         CDS       T09957                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106137189
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106137189
Spliceosome [BR:atra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106137189
 Complex C
   U5 SnRNP specific factors
    106137189
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WD40_RFWD3 NBCH_WD40 ANAPC4_WD40 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_SPT8 eIF2A Beta-prop_IFT140_1st Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Nbas_N Beta-prop_Nup120_160 Beta-prop_Vps41 Cytochrom_D1 Beta-prop_HPS5 KNTC1_N
Other DBs
NCBI-GeneID: 106137189
NCBI-ProteinID: XP_013193433
LinkDB
Position
17:join(590025..590141,590233..590359,590945..591148,592177..592419,592921..593099,594221..594400)
AA seq 349 aa
MPELEIKRKAEEYSVVPSKRVRHEISVAGTREKAVVTSAVPRTSNLYAPIMLLEGHQGEI
FTAKFHPEGKHLASAGFDRQILLWNVYGQCENVMVMTGHTGAIMELCFSPDGAHLYTCAT
DNTVAVWDVPTGQRVKKLRGHASFVNSVSGARRGPELLVSASDDNTIKLWDARKRNPIAS
FDSTFPVTSVLFNDTAEKIISAGVDNVIKVWDIRNNQISYKIKGHTDTVTGMSLSYDGSY
LLSNSMDNTLRIWDVRPFAPSERCVKLMSGHQHNFEKNLLRCAWSPDGSKVAAGSSDRFL
YVWDTTSRRVLYKLPGHNGSVNDVDFHRTEPIVLSASSDKQIYLGEIDH
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgcccgaattggaaataaaaagaaaagcggaagaatattccgtagtaccatctaaaagg
gtccgccatgaaatatctgttgctggcacaagagaaaaggctgtggttacttcagcggta
ccacgcacatctaatctatatgccccgataatgctcttagaagggcatcaaggagagatt
tttactgcaaaatttcatcctgaaggaaaacatttagcatccgcaggattcgatcggcag
atattgttatggaacgtatacgggcagtgcgagaacgtgatggtgatgaccggccacacg
ggggccatcatggagctctgcttctcaccagacggcgcccacctgtacacgtgcgccact
gacaacaccgtagccgtgtgggacgtgccgacaggacagcgcgtcaagaagctgaggggg
cacgctagctttgttaattctgtctcaggtgcacgaagagggccagaactcctagtttcc
gcatcagacgacaacaccataaaactctgggacgccaggaaacgcaacccaatagcttca
ttcgacagcacattcccggtcacatcggtgctgttcaacgacacagcggagaagatcata
tccgctggagtggacaacgttatcaaggtgtgggacatcaggaacaatcagatctcgtat
aagattaaggggcatacggatactgttacgggcatgtcactgtcatatgacggctcctac
ctcctgtcgaactctatggacaatacgcttcgcatttgggacgtccgcccgttcgcgcca
tcggaacgctgcgtcaagctaatgtcaggacatcaacataacttcgaaaagaacttgctc
agatgcgcgtggtcacctgatggatctaaggtggcggctgggtcttctgaccgtttcctg
tacgtttgggacaccacatcccgaagagtcctgtacaagttgcccggacacaacggatca
gtgaacgacgtagacttccaccggactgaacctattgtactctccgcttctagtgacaaa
caaatatatcttggagaaattgaccattag

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