KEGG   Amyelois transitella (navel orangeworm): 106137376
Entry
106137376         CDS       T09957                                 
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
  KO
K13191  RNA-binding protein 16
Organism
atra  Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:atra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106137376
   03041 Spliceosome [BR:atra03041]
    106137376
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     106137376
Spliceosome [BR:atra03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    106137376
SSDB
Motif
Pfam: CID RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 106137376
NCBI-ProteinID: XP_060801387
LinkDB
Position
8:complement(join(1065331..1066652,1066868..1066906,1067406..1067504,1068659..1068855,1069528..1069638,1070718..1070833,1071270..1071401,1072600..1072689,1073499..1073593,1074127..1074206,1075113..1075339,1076132..1076323,1078457..1078665,1079588..1079700,1080639..1080752,1081624..1081745,1082282..1082347,1082836..1082905,1083331..1083584,1084080..1084174,1084684..1084825,1085752..1086042,1086118..1086153))
AA seq 1403 aa
MDMSEVKAFNSELSGLYDNKPPISKAKMSAITRGAIKAIKFYKHVVHSVEKFIQKCKPEY
KVPGLYVIDSIVRQSRHQFGQDKDVFAPRFAKNMQQTFANLFRCPPEDKRNIIRVLNLWQ
KNNVFSSQVIQPLLDMADPNHPLHQEVLAQQNNTANGSSLNVTHNSDKNSPAPAPLHTPP
DSSPMGDQFQDQPSNQSGVKFNRKLLNDFEYESEDEPVPVEPTPPPHSAPLQSHHNQSHQ
SHQSHQSHQGHSHQQHQPHQTITGQNPADVLGSILTNPEIMRQLQSLQLMTGMQIPNLMP
MMNDMQMQHNQNQNLPFLNSQSEQQKQTEPKDDMANESDIEFVETGPQVIEIPDVNDSRS
PSPAGRRHRSRSRSPRRRRGERRGERRRRDRERDKDREREKDREKSYKEREAEKEKQRER
EKKGLPPIKKENLSVCSTTLWVGHLSKLATPEELSDLFGALGGVSSIDVVAPRGCAFVVM
ERRRDAAKARAKLNKHKLHSKEITVAWAPGKGVKGREWKDYWESEQGVSYLPWAALHQRW
ALGALSLDALEDGGAVDEETLPPWLPPRIIPKMMDNMSMLGLPPSSAANMLAMPAPGMSG
GMAGGMAGGMSGGMAGGMSGMLPPNIPLPQAAITMPVHRMPPPGLPAGLPPGLPPGLPPM
RPPTLPAGVTGMVGGFLGGLLGGIVPGLPLMPHAAPQQPQHQPPAAAAADDAMELDPEEP
PEPAAPPALPDQLQALLSKPPPVFNSAEPPPGFNINEPPPFNASQPPPTEENKTEEERKS
DRDRRDRDRDRDRRGDRDRRDRDRRGDRDRRDRERDVRDNRDDRRDRDRDRDRDRGRDRR
DRDRFQGRDSNRERSRDKSPRANAENPEKSLQDRLWEMANGKPRDGEKDFDIERPTDRER
NTLIDRLPAGHDAQAGDEEENKPALAGAPGAAPEGWAPPRAPLAGPPFRAELRMRGPPRP
PMQGGPWMEGPVQGPGPGFGPRFNGMGPPPLFNRPPFERPPFDGPMFDGPPRFERPPFNR
MPFDGMNRPPFDGARPPFDGPRPPFDGPRPPFDGPRPPFDGPRQFDGPFEGDRPFDGPPR
FDGPPEFFDRGRRFDEREQFGDRGWNGDRDNREWPERRGEWDDRRRDRRSRDHEDRFRDR
QDRQDRPDRQDRTDRSADRRRSFDNSKQEEKPARPPREERNRNKDRKSRWGAAEDVVEPQ
ITETAEVTAEDSENKNSEVVASQEEQIVQNNDNNKVNEETDSIEMQSEEKQHFEESKVDK
YEDKANDQDSNDSIPKDEESTTFKDSESNSTQEERFNEVENPGEQENFNSSNYDNEESSN
QNSTEPVENEPIESEASKDSAPDLYDASDAIDTSFQPSMDTSEPAVVEKQTPTAPDDDIF
SQEKGEAMEENAEENVVESKEGA
NT seq 4212 nt   +upstreamnt  +downstreamnt
atggacatgtcggaagtaaaagcgttcaattcggagttatccggattgtacgataacaag
ccgcctatatcaaaggctaaaatgagtgctatcaccagaggtgctataaaggccataaag
ttctacaaacatgtagtacatagtgtggaaaagttcatacaaaagtgcaaaccagaatac
aaagtacctggtttatatgtgatagattcaattgtccggcaatctagacatcagtttggg
caagataaggatgtattcgctcccaggtttgcaaaaaatatgcaacaaaccttcgcaaac
ttgtttagatgcccccctgaagataagcgcaacatcatccgagtgttgaacctgtggcag
aagaacaatgtgttcagctcacaagtcatccagccgttgctggacatggccgatcctaac
catccactacaccaggaggtcctcgcgcagcagaataatactgctaatggtagcagtcta
aatgtgacacataattcggacaagaattctcccgcaccagctccattgcatactcctcca
gactcctctccgatgggtgatcagttccaagaccagccatccaatcagtcgggagtgaaa
ttcaaccggaaacttctcaacgactttgagtacgagagcgaagacgagccggtgccggtg
gagcccacgccgcccccgcattccgcgccgctccagtctcaccacaaccagagtcatcag
agtcaccagagccatcagagtcaccagggtcattcgcatcagcaacatcaaccgcatcag
acgatcacgggtcaaaatccggcagacgttcttggaagcatcctgacaaatcccgaaatc
atgaggcagttgcaaagtttacagctcatgacaggaatgcagatacccaatctaatgccc
atgatgaatgacatgcaaatgcaacacaaccagaaccaaaatcttccattcttgaattct
cagtcggaacaacaaaagcagactgaacccaaagacgacatggccaacgaatctgatata
gaattcgtcgagaccggacctcaagtcatagagattccagacgtgaatgattcaaggagc
ccgtcgccggcgggccggcggcaccgctcgcgctcgcgctccccgcggcggcggcgcggc
gagcggcgcggcgagcggcggcggcgcgaccgcgagcgcgacaaggacagggagagagag
aaggatcgagaaaagagttacaaagagagggaggcggagaaagagaaacagcgggaaagg
gagaagaaaggattgccgcccatcaagaaggaaaaccttagcgtgtgcagcaccacgctg
tgggtgggccacctgtccaagctggccacgcccgaggagctgtcggacctgttcggcgcg
ctgggcggcgtctccagcatcgacgtggtggcgccgcgcggctgcgccttcgtggtcatg
gagcgccgccgcgacgccgccaaggcgcgcgccaagctcaacaagcacaagctgcactcc
aaggagatcaccgtggcgtgggctccagggaaaggtgtgaaaggtcgcgagtggaaagac
tactgggagtcggagcagggcgtgtcgtacttgccgtgggcggcgctgcaccagcgctgg
gccctgggggcgctgtcgctggacgccttggaggacggcggcgctgtggacgaggagact
ctgccgccttggctgccaccaaggataatcccaaaaatgatggacaatatgtccatgctg
ggcctgccgccgtcgtccgcggcgaacatgctggcaatgccggcgcccggcatgtcgggc
ggcatggcgggcggcatggcgggcggcatgtccggcggcatggcgggcggcatgtcgggc
atgctgccgcccaacattccgctcccgcaggccgccatcaccatgcctgtgcacaggatg
cctccgcctggtcttcccgcgggactccctccagggctgcctccggggttgccgcccatg
agaccgcccacattgccagctggcgttacaggtatggtaggcggattcctaggtggtttg
ttgggtggcattgttcccggcctgcctttgatgccacacgccgctccgcaacagccacaa
caccagcccccggccgccgccgccgccgacgacgccatggagctggaccccgaggagccc
ccggagcccgccgcgccgcccgcgttgcccgaccagctccaagccctgctgtcgaagccg
cccccggtcttcaactcggcggagccccccccggggttcaacatcaacgagcctccccca
ttcaacgcatcacaacctccccccactgaggagaacaagacagaggaggagaggaagtca
gaccgcgacaggagagaccgagaccgagaccgcgaccggcgcggggaccgagaccggaga
gaccgcgaccggcgcggagaccgcgaccggagggaccgggagcgggacgtgagagacaac
cgcgatgaccgccgcgaccgcgaccgcgaccgggaccgggaccgcggccgggaccgacgc
gaccgcgaccgcttccagggcagggacagcaacagagaacgcagccgcgataaatccccc
cgcgccaacgccgagaatcccgagaaatccctccaggaccgcctgtgggagatggccaac
gggaagcctcgcgacggagagaaggacttcgatattgagcgacccacagacagggagagg
aacaccctcattgacaggctgcctgctgggcacgatgcacaggcgggcgatgaagaggag
aacaagccggcgctggccggagccccgggcgccgcgcccgagggctgggcgccgccgcgg
gcgccgcttgcggggccgcccttcagggctgagttgagaatgagaggcccgcctcgacca
ccgatgcaaggagggccatggatggaaggcccagtacaagggccggggccgggattcggg
ccgcgtttcaacggaatgggcccaccgccgctgttcaaccgtccgcctttcgaaaggccg
cctttcgatggcccaatgttcgacggaccgccgcgatttgaacgcccgccgttcaatagg
atgcctttcgatggaatgaaccggccgccgtttgatggcgcgaggccgccttttgatggg
cccaggccgcctttcgacggccccagaccaccgttcgacggacccagaccaccgttcgac
ggtcccaggcagttcgacggaccgttcgaaggggatagaccgttcgatggacctccaagg
tttgacggtcccccagaattcttcgatagaggcaggcgattcgacgagcgtgaacaattc
ggcgataggggttggaacggcgaccgggacaatagggaatggcccgaaaggagaggggaa
tgggatgaccgcaggagggacaggaggagtagggatcacgaagacaggttcagagaccgc
caagatcgccaggacagaccggatcgtcaagacaggacagatcgttctgcagatcgcagg
aggagtttcgataattccaaacaggaagaaaaaccggccaggccaccgcgagaggaaaga
aatagaaacaaagataggaaatctagatggggcgctgctgaagatgtagtggaaccgcag
atcacagaaaccgctgaagtcacagcggaggatagtgagaacaagaatagtgaagttgtc
gctagtcaagaggaacagattgtacagaataatgataacaataaggttaatgaagaaaca
gatagcattgaaatgcaaagcgaggagaagcaacatttcgaggagtctaaagttgataaa
tatgaggacaaggctaatgatcaggatagtaatgattccataccaaaagatgaagaaagt
acaacatttaaagactcggagagtaacagtacacaagaggaaagatttaatgaagttgaa
aatcctggcgaacaggagaatttcaactccagtaattacgataatgaagaaagtagtaat
cagaatagcactgaacccgtagaaaacgaaccaatagaaagcgaagcatccaaagattcc
gcacctgatctatacgacgctagcgatgccatagacactagtttccaaccttctatggat
acttctgaacctgcagtagtagaaaaacaaactcctacagctcctgatgatgatatattc
agtcaagaaaaaggggaagcaatggaagaaaatgcagaagaaaatgtagtcgaaagcaaa
gagggagcttga

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