Amyelois transitella (navel orangeworm): 106137648
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Entry
106137648 CDS
T09957
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106137648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106137648
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
106137648
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Sec3_CC
DASH_Dad3
Motif
Other DBs
NCBI-GeneID:
106137648
NCBI-ProteinID:
XP_013193962
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All DBs
Position
10:5748372..5750060
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AA seq
562 aa
AA seq
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METKSEIFSQRLIIAVLWNIGLQTFIAVLLVFLIQIDILHPLSWIASTLTDIFGWKMGLN
IILLGLVSFFHAYIYGNYYTIPVPKYFTRFSLFLNLFSVQNVTFSILYALSGYFTMSLYS
SLAKSNFNTLKKKCEHFDGQCLMEQSLYLQFGGMWMGLYYFLNTHILSPTLLLFPHIYQD
KFQQIKLAVSNILSTGFRNSILPVVYYCIFYYIWGSKPRTVVSDVYGAYLEDPPLDNLYN
LFTSGIWIGLWFYTSLFLISVYTMRTVFNIVLTEPMKFPIESDSSLTLHNALAQRSQFNG
YLGAQDLRILAMTDPARRHNIFTLSQPGGHPRNWNNLLEQCLNIINDFSKELDNINGDGK
KIEINNSDQKKLMNISPKSGLYSSKLRNLAESPKLIELKDYNRNKVENTFANAVKEELNI
FVNKLCQKPGIHYFFGELTDTKLKYLLLHAQPVMWTCEGLAFIASASLTEDKYGVVQNDL
PAIMSALVNLKQNLDKLSKPGLVPRKHILHDLLAIKIKSALVSAVKRSIYKIVITFSKYI
HEIPLDPDVQTAIQPFLMCKEA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaaaagtgaaattttttcacaaagattaattatagcagtgttgtggaatatt
ggactacagacttttatcgctgtactattggtatttctaatacaaattgacatactacat
cccctatcatggattgcttctacactcaccgacatttttgggtggaaaatgggtctgaat
ataattcttcttggtttagtgtcttttttccatgcttatatttatggtaattactatacg
attccagtgccgaaatactttacgaggttttcattgtttctgaatttattttctgtacaa
aatgtaacatttagtattctctatgcattgagtggatattttacaatgagtttgtattca
tctttggctaaaagcaactttaatacactaaagaaaaaatgtgaacattttgatgggcag
tgtctcatggaacaaagtttgtatctgcaatttggcggaatgtggatgggtttgtactac
ttcttaaatactcatattttaagccctacacttctcttgtttcctcacatttatcaggac
aagtttcaacaaatcaaactggctgtgagtaatatactttctacaggatttaggaattct
atcctccctgttgtttattattgtattttttactatatatgggggagtaaaccaagaact
gtggtatcagatgtatatggtgcatatttagaagatcctccattagataatttgtacaac
ttattcacatctggtatttggattggactttggttctatactagtttattcttaatatct
gtgtatactatgagaacggtattcaatattgtgctcaccgaaccaatgaaatttcctata
gaatcagattcaagtctaacattacataatgcattagctcaaagatcacaattcaatggt
tatttgggagcacaggacttgagaatcttagccatgactgatcctgctagaagacataat
attttcacattgtcgcaacctggaggtcatccaagaaactggaataatttattagaacaa
tgcctgaatatcataaatgatttcagcaaagaattggataatattaatggagatggaaag
aaaatagaaattaataattctgatcaaaaaaagttgatgaatataagtcctaaaagtggc
ttgtattcaagtaaattaaggaatttggcagagtcaccaaagttgattgaactcaaagat
tacaataggaacaaagttgaaaacacatttgcaaacgcagtgaaggaagaactgaacata
tttgtgaacaaattatgccaaaaaccaggtattcactatttttttggagagttgacagat
acaaagctgaaatatttgttgttgcatgctcagcctgtaatgtggacttgtgaagggttg
gccttcattgcatcagcttcattgacagaggacaaatatggagtagtccagaatgacttg
cctgccatcatgtctgcactggtgaatctcaaacagaacttggacaagctgagcaaaccg
ggcctggtgcccagaaagcatattttgcacgacttgcttgcaataaaaataaagagtgcc
ctcgtatcagcagtcaaaagaagtatctataaaatagtaataactttttcaaagtatatt
catgaaatacctctggatccagatgttcaaactgccattcaaccatttttaatgtgtaaa
gaggcttaa
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