KEGG   Amyelois transitella (navel orangeworm): 106137681
Entry
106137681         CDS       T09957                                 
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13
  KO
K15164  mediator of RNA polymerase II transcription subunit 13
Organism
atra  Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:atra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106137681
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Mediator complex
    CDK-module
     106137681
SSDB
Motif
Pfam: Med13_C MID_MedPIWI Med13_N
Other DBs
NCBI-GeneID: 106137681
NCBI-ProteinID: XP_060810742
LinkDB
Position
5:join(1587135..1587194,1605671..1605971,1626730..1626814,1632329..1632412,1634352..1634488,1634799..1634932,1635381..1635530,1636118..1636203,1637627..1637716,1639680..1639821,1640218..1640328,1640891..1641060,1643005..1643170,1643594..1643716,1644651..1644893,1645392..1645548,1646202..1646506,1646912..1647073,1647599..1647780,1648887..1649012,1649536..1649751,1650620..1650779,1652281..1652521,1653389..1653591,1655871..1656053,1656673..1656902,1657419..1657564,1658195..1658378,1658944..1659037,1659592..1659834,1660327..1660580,1661218..1661350)
AA seq 1766 aa
MTHQTNGASLEDCHTNFFALTELYGIKWRKLVWGETSGGEGDEGSAPLADPVISSYARCL
AGDILCVWRRVPAPQSADIYEMTAPAPPPLSLKAAKELWIFWYGEEPDLNGLVAPELIAS
QGDQGSWESGLSYECRSLLFKALHNLIERCLLSRDFVRLGKWFVQPYDGDEEDVGNSPWH
LSFSFAFFLHGESTVCASVDVRQHPPVRTLPRRSHNNNHHQKVILAPFGLEGTLTGREWS
DSDAATARLLDAWRQLYPLEQGCGAVEVIIGGTRMRYPVPYALLTSLGARAPPPAHCRAR
CATALTALTTPTPHLHHAESCYSESAPDKSEDFVDPTRKTACACNKWRRRRARPPRPEPF
HRRPRRARLHRPHRDTSAGGALCLAGGACSPGSCGGGSPAPPASAPSSAGAQPSSPHHAP
QLQVVAGVPASLHTPAPTPDPLAPPTPAPPSAPGTKLFAQGDSPPSGSANNSISQLDPLP
AELVKRPSLPVAERKVDPLEDEHSLHMLYDYTTVYAWLEHPVKRFKSEENSWSEELALGS
RGGDLYAGHEHTTMATLLPAADTDIKLEKTDHEDVKEYKNLFTSDGLCPTLKDLDQIFDN
SDDAASGDESVRLLAVQTPPDSNKSMEESRYMRGGCVRAEELSKMFPTPPSMEPHTQPSP
GFSLPDDTPHAHHHALAHAQRHLLAGSPPPDPIEDWSYVFKPPTVYKYVGSSKYAPLTCL
PSQQLPAVSLPPAAVYRPRWQHDAAEATGVKRSASPAAETREATRSRRACSATPGGAAAG
DAPPPAPAASPAPRASPAPSGASPASPRATHAACPLLLNVLLADTVLNVFRDHNFDSCTL
CVCNAGPRVVGNIRGADAATYLPGPTSPGSPSSADEDPGRCSCGFSAIVNRRLSHKAGLF
YEDEMEITGLAPECGGGGSAALADAAALVLAACAGPAGGAAAALARAARAPAAHDELRLN
VLEYSDGGAAAARALAAAGGAGAGAVHRWPFIGARAPRSSRDVVRLMRRLRPLLQDAIQK
RCCGARMWDGVTGPLTWRQFHRLAGRGNEDLCEPQPVPPLLVGHDRDWISLSPYAIRHWE
RLSLEPYSYARDVAYVVLAAEGDVLTEPLRTFFRELSTAYEACRLGRHQPVHRIAREGIV
RAAPAPRPGERAEHEWAGAVPAGRLGDYVRAYGDALRSSLVPALAALGLERALLDPEPAT
PDHPAAPSTQGEAEESGASANAQAGAGAGGGEGGAPLLVLYLVEPPAPHDQRPRALPALL
RLAARAHHALRHHNPLVQIISLEGVYEMWGMGGCVSELRSLAFSVFSGARRLLQHQPDGK
SLTGFGTAADANLFLSNKDEKNRAPYKLFTPAWVLAPPRALRDVAESWGQNYGSTGAVLF
VSYCLSHDQRWLLAAATDARGELLDTVAINIDVPHRSRRRRSGPARRLGLKKLMDFTLGV
MSQAAVPWRLVVGRVGRIGHGELKGWSWLLSRKNLYRSSTALREMCSSCSVLYPGGAPVI
LSACLVSTEPDSCLRLMADRFTPDERFSQASIQSHLHTPRDVTATHILVFPTSATTQSNQ
MPFDPPMANGEGDDMIFNVDMIGDEDMGEDNISDLFIGDVFSNMWAQNSPRRADDDPASP
AGHAPHAPAPHHHDDAAAEQVGTVLQQPLALGYLVSTAPLGGMPRWWWAGCDHLRDACPA
FLKNALHLHTGNVQSADDYTSLMQRRDHNAHPLDSQTTTDVLRYVLEGYNALSWLSLDNA
THDRLSCLPLHVQVLMQLYHTAAALG
NT seq 5301 nt   +upstreamnt  +downstreamnt
atgacgcatcaaacaaacggtgccagtctcgaggattgccacacaaacttcttcgccttg
acggagctgtatggcataaaatggcgtaagctcgtgtggggggagacgagcggcggcgag
ggcgatgaaggctccgcgccgctcgccgaccccgtgatcagcagctacgcgcgctgcctc
gcaggcgacatcctgtgcgtgtggcggcgggtgccggcgccgcagtccgccgacatctac
gagatgacggcgccggcacccccaccgctctcgctcaaagccgccaaggagctgtggatc
ttctggtacggcgaggaaccagacttgaacggcctcgtggcaccggagctcattgcgagc
caaggcgaccaaggatcgtgggaaagtgggctttcctacgagtgccgttcgctgctcttc
aaggctcttcataacctcattgaaagatgtctcttatctagggactttgtgaggcttggc
aagtggttcgtgcaaccgtacgatggagatgaagaggacgttggcaacagcccgtggcac
ctgtcgttctcgttcgcgttcttcctccacggcgagagcacggtgtgcgcgtccgtggac
gtgcggcaacacccgcccgtgaggactctgccgcgccgcagccacaacaacaaccaccat
cagaaggtgatcctggctccattcggtctggagggaactctgactgggcgggaatggagc
gacagtgacgccgccaccgctcgcctgctggacgcgtggcgacaactataccctttggag
cagggctgcggggccgttgaggtgataatcggcggcacgcgcatgcgctacccggtgccg
tacgcgctgctgacgtcgctgggcgcgcgcgcgccgccgcccgcgcactgccgcgcgcgc
tgcgccaccgcgctcaccgcgctcaccacgcccacgccgcacctgcaccacgcggagtct
tgctacagcgagtctgccccggacaagtccgaagacttcgtggacccgacgcggaagacc
gcgtgcgcatgcaacaagtggcggcggcggcgagcgcgccccccccgccccgagcccttc
caccgccgcccgcgccgcgcccgcctccacaggccgcatagagacacgtcggcgggcggc
gcgctgtgcctggcgggcggcgcgtgctcgccgggcagctgcggcggcggctcccccgcg
ccccccgcctccgcgccctcctccgccggcgcgcagccctcctcgccgcatcacgcgccc
cagttacaggtggtggcgggcgtgccggcgtcgctgcacacgcccgcgcccacgccggac
ccgctggcgccgcccacgcccgcgccgccctccgcgcccggcaccaagctattcgcacag
ggcgattccccaccgagcggctcggcgaacaactcgatcagccaactggacccgctgccg
gccgagctggtcaagcggcccagtctgcccgtggccgagaggaaggtcgaccccctggag
gatgagcattcactgcacatgctctatgattataccaccgtctacgcttggctggagcac
ccagtgaagcgatttaaaagcgaagagaacagttggagcgaagagttagctctgggttcg
cgcggcggcgacctgtacgcggggcacgaacacaccacgatggccactttgctgcccgcc
gcggacacggacatcaagctggagaagacggaccatgaggacgtaaaagagtacaagaac
ctattcacgtcggacggcctctgtccgacgctgaaggacctggaccagatattcgacaat
tctgacgacgcggccagcggcgatgagtcggtaagacttctggccgtgcaaacgccgccg
gactccaacaagtccatggaagagtcccggtacatgcgcggcggctgcgtccgggccgag
gagctgagcaagatgttccccacgccgcccagcatggagccccacacgcagccctcgccg
ggcttctcgctgcccgacgacacgccccacgcccaccaccacgcgctcgcgcacgcgcag
cggcacctgctggcggggtcgccgccgcccgaccccatagaggactggtcgtacgtgttc
aagccgccgacggtgtacaagtacgtggggtcgtcgaagtacgcgccgctgacgtgcctg
cccagccagcagctgcccgccgtcagcctgccgcccgccgccgtctaccgcccgcgctgg
cagcacgacgcggccgaggctacgggcgtgaaacggagcgcgtcccccgcggcggagacg
cgcgaggcgacgcgcagccggcgggcgtgctcggcgacgccgggcggcgcggcggcgggc
gacgcgcctccgcccgcgcccgccgcgtcccccgcgccgcgcgcctcgcccgcgcccagc
ggcgcgtcgccggcgtccccgcgggccacgcacgccgcctgcccgctgctgctcaacgtg
ctgctggcggacaccgtgctcaatgtgtttcgtgatcacaacttcgacagctgcacgctc
tgtgtgtgcaatgcggggcccagggtcgtgggcaacatccggggcgcggacgcggctact
tacttgccggggccgacgtccccgggctcgccgagctccgcggacgaggacccgggccgg
tgtagctgcggcttcagcgccatcgtcaaccggcgcctgtcgcacaaggcgggtctcttc
tacgaggacgagatggagatcacggggctggcgccggagtgcggcggtggcgggtcggcg
gcgctggcggacgcggcggcgctggtgctggcggcgtgcgcggggcccgcggggggcgcc
gccgccgcgctcgcccgcgccgcgcgcgcgcccgccgcgcacgacgagctgcggctcaac
gtgctcgaatactcggacggcggcgcggcggcggcgcgcgcgctggcggcggcgggcggc
gcgggcgcgggcgccgtgcaccgctggcccttcatcggcgcgcgcgcgccgcgctcctca
agggacgtcgtcagattaatgcgccgcctccggccgctcctgcaagacgccatccagaag
cggtgctgcggcgcgcgcatgtgggacggcgtgaccggcccgctgacctggcggcagttc
caccggctggccggccgcggcaacgaggacctgtgcgagccgcagcccgtgccgccgctg
ctggtgggccacgaccgcgactggatctcgctgtcgccgtacgccatcagacactgggag
agactatccctggagccgtactcgtacgcgcgcgacgtggcgtacgtggtgctggcggcg
gagggcgacgtgctgacggagccgctgcgcaccttcttccgggagctgtccaccgcctac
gaggcgtgccggctcggcaggcatcaaccggtgcaccggatagcgcgcgagggcatcgtg
cgcgcggcgcccgccccgcggccgggcgagcgcgcggagcacgagtgggcgggcgccgtg
cccgccggccgcctgggcgactacgtgcgcgcctacggcgacgcgctgcgctccagcctg
gtgcccgcgctggccgcgctgggcctggagcgcgcgctgctggaccccgagcccgccacg
cccgaccaccccgccgcgccctccactcaaggcgaggcggaggagagcggcgcgagcgcg
aacgcgcaggcgggcgcgggcgcgggcggcggcgagggcggcgcgccgctgctggtgctg
tacctggtggagccgcccgcgccgcacgaccagcggccgcgcgcgctgcccgcgctgctg
cggctggcggcgcgcgcgcaccacgcgctgcggcaccacaacccgctcgtgcagataata
tccctagaaggcgtttacgagatgtggggcatgggcggctgcgtgtccgaactccggtcg
ctggcgttcagcgtgttcagcggcgcgcggcggctgctccagcaccagcccgacgggaag
tcgctcaccggtttcgggaccgctgcagacgcgaacctcttcttatccaacaaagatgag
aaaaaccgagcaccgtacaagttgttcacgccggcctgggtgttagcgccgcctcgcgcc
cttcgagacgtcgccgagagctggggccagaactacgggtctacgggcgcggtgctgttc
gtgtcctactgcctgtcgcacgaccagcgctggctgctcgccgcggcgaccgacgcgcgc
ggggaactgctcgacactgtcgccatcaatatcgatgtgccgcatagatcgcgacggaga
aggtctggaccggcgcggaggctgggcctgaagaagctgatggacttcacactgggcgtg
atgagccaagcggccgtgccgtggcggctcgtcgtaggccgagtggggcgaatcggacat
ggagaactcaaaggttggagctggctcctgtcccggaagaacctgtaccgatcgtcgacg
gccctgcgggagatgtgcagcagctgctccgtgctgtaccccggcggcgcgcccgtcatc
ctgtcggcctgcctcgtgtccaccgagcccgacagctgcctgaggctcatggccgacagg
ttcactccggacgagaggttctcgcaagcgtcgatacaatcccacctgcacacgccgcgt
gacgtcaccgccacacatatcctagtgttccccacctccgccaccacacagtcaaaccaa
atgccgttcgacccgccgatggccaacggcgagggcgacgacatgatattcaacgtcgac
atgatcggcgacgaggacatgggcgaggacaacatatcggacctgttcatcggcgacgtg
ttctccaacatgtgggcgcagaacagcccgcggcgcgccgacgacgaccccgccagcccc
gccggccacgcgccgcacgcgcccgcgccccaccaccacgacgacgcggccgcggagcaa
gtgggcacggtgctgcagcagccgctggcgctgggctacctggtgtcgacggcgccgctg
ggcggcatgccgcgctggtggtgggcgggctgcgaccacctgcgcgacgcctgccccgcc
ttcctcaagaacgcgctgcacctgcacacgggcaacgtgcagtccgccgacgactacacc
tcgctcatgcagcgccgcgaccacaacgcgcacccgctcgactcgcagaccaccaccgac
gtgctcagatacgtgctcgaaggctacaacgccctgtcgtggctctctctggacaacgcg
actcacgaccgcctctcgtgtctgccgctacacgtgcaagttctaatgcaactctaccac
accgccgccgcgctcgggtaa

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