Amyelois transitella (navel orangeworm): 106137859
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Entry
106137859 CDS
T09957
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106137859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106137859
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106137859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF7526
Motif
Other DBs
NCBI-GeneID:
106137859
NCBI-ProteinID:
XP_013194238
LinkDB
All DBs
Position
18:join(1113919..1114021,1114142..1114268,1114743..1114851,1115517..1115715,1116606..1116733)
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AA seq
221 aa
AA seq
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MGIEDIASKEFKLRPMKCELNFLSKSDGSAILSQGETVVLASVNGPLDVKMQSQSIEKST
LEVLFCTKGGKPSVGDRYKENIIRQTCETCVLGSVYPRTAITITIQELEDYGGLLSCSLN
CVCLALLNSGVAMRCVYAAVSCAVEDTGNIVLEPTHQQLETARANMSFVFESREKTLITS
FTEGTFSEDTYKEALERCRAASDLIFGFYRDIVSKYCNVIG
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgaagatatagcttcgaaagaattcaaactaagaccaatgaagtgcgaactg
aattttcttagtaaatctgatggctcggcgatattatcacaaggagaaacagtagttttg
gcgagtgtaaacggaccattggatgtgaaaatgcaaagtcagagtattgaaaaatcaact
ttagaagtccttttttgcactaaaggtggaaaaccatcagttggagacaggtacaaagag
aacataattagacagacttgtgagacctgtgtcctgggcagtgtgtatccgaggacagcc
atcacaatcaccattcaggagctggaggactatggagggcttctatcctgcagtttgaac
tgtgtatgcttagccctcctcaactctggcgtggcgatgcgatgcgtgtacgcagccgtg
tcgtgcgccgttgaagacacgggtaatatagtgttggagccgacccaccaacagttagag
actgcgagagcgaatatgagcttcgtgtttgagagtagggagaaaactcttattacgagt
tttacagagggtacatttagcgaggacacatataaagaagcgttggagcgttgtcgcgcg
gccagcgacctgatcttcggcttctaccgggatattgtcagcaaatactgcaacgttata
ggatag
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