Amyelois transitella (navel orangeworm): 106137876
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Entry
106137876 CDS
T09957
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106137876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106137876
Enzymes [BR:
atra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
106137876
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106137876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
MMR_HSR1
AAA_16
AAA_10
nSTAND3
AAA_22
AAA_24
ATP_bind_1
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
106137876
NCBI-ProteinID:
XP_060805317
LinkDB
All DBs
Position
18:join(1615070..1615162,1615240..1615401,1615645..1615864,1616418..1616588,1617383..1617471,1617865..1617966,1618320..1618451,1619541..1619722,1620130..1620241)
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AA seq
420 aa
AA seq
DB search
MTEVQLQEFKLDPDSELRFEVESKNEKVVLEIKNGYAELFGTELVKGKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYIAKETPMVIYLNVHAALEQQRVAAEQGNTRGPVAMVVGPSDV
GKSTLTRLLLNYAVRMGRRPIYVDLDVGQGQISVPGTIGALLVERPASIEEGFSQQAPLV
YHFGHSSPSENLELYNTIVSRLAEVIAERCENNKKASTSGVIINTCGWIKNAGYKVLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSSNQRAEVRDARIREYF
YGKRTPYYPHSFDVKFTDLKIYKVGAPSLPDSCMPLGMRAEDALTKLVPAAASPALAHRL
LAVSFAAAPTDDVLHSNLAGFVCVTAVDMERQTLTILSPQPRPLPNTVLLLSELQYMDNH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagttcagttgcaggagtttaaactagaccctgattcagaattacgctttgaa
gttgaatcaaagaatgaaaaagttgttttagagattaaaaatggttatgcggaattattt
ggcaccgaattggtgaaagggaagccctatgagttccatacgggagctaaagtggcagtg
ttcacgtggcacggctgcacagttgagttgcgaggtcgcaccgaagtcagctatattgct
aaagagactcctatggttatttatttaaacgtacatgccgcacttgaacaacagagggtg
gcggcagaacagggcaacaccagaggacccgttgccatggtcgtggggcccagtgacgtg
ggcaagtctacattgacaaggttactgctgaactatgcggttaggatgggtcggagaccg
atatatgttgatctggatgttgggcagggccagattagcgttcctgggactattggagcc
ctgctagtagagagacctgcttccatagaggaaggcttcagccaacaagcgccgttggtg
tatcacttcggccacagttcccccagtgaaaacctcgagctgtacaacaccatcgtctct
aggctggccgaagtcattgcggagaggtgtgagaataataaaaaagcatccacatcaggc
gtcatcataaacacatgtggttggataaaaaatgcagggtacaaagtgctgacacacgca
gcgcaggctttcgaggtggatgtgatattagtgttggacaatgaaaggttgtacaatgaa
ctgaagagggacatgccgaaattcgtcaaagttgtatacttgccgaaaagcggaggggtg
gtagagagatcgtcgaatcaacgcgccgaagtgcgggacgcacgcattcgcgagtacttc
tacggcaagcggacgccgtactacccgcattccttcgacgtcaagtttactgacctcaag
atatacaaggtgggcgcgccgtcgctgcccgactcgtgcatgccgctgggcatgcgcgcg
gaggacgcgctcaccaagctggtgccggcggccgcgtcgcccgcgctggcgcaccgcctg
ctggcggtctcgttcgcggccgcgcccaccgacgacgttctacattcgaatttggctgga
ttcgtgtgcgtgacggcggtagacatggagcgtcaaacgctcacgatactgtctccgcag
ccgcggcctctaccaaacacagtgcttcttttgtcagaactgcaatatatggataaccac
tag
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integrated database retrieval system
