Amyelois transitella (navel orangeworm): 106138045
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Entry
106138045 CDS
T09957
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11
KO
K03008
DNA-directed RNA polymerase II subunit RPB11
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03020
RNA polymerase
atra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106138045
09124 Replication and repair
03420 Nucleotide excision repair
106138045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atra03021
]
106138045
03400 DNA repair and recombination proteins [BR:
atra03400
]
106138045
Transcription machinery [BR:
atra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106138045
DNA repair and recombination proteins [BR:
atra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106138045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L_2
RNA_pol_L
SHNi-TPR
Motif
Other DBs
NCBI-GeneID:
106138045
NCBI-ProteinID:
XP_013194511
LinkDB
All DBs
Position
5:join(4042543..4042595,4042679..4042768,4043175..4043349,4043887..4043922)
Genome browser
AA seq
117 aa
AA seq
DB search
MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG
YKVPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKDGLD
NT seq
354 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcgccacctacctttgagtcattccttttatacgacggagaaaaaaaggtacag
aaggaagaggatacaaaagtaacaaatgctgcaatattcacagtaaataaggaggatcac
accctaggaaatatgattagacaccaacttcttaaggacccaaaagtattatttgctggc
tacaaagtcccacaccctttggagcacaaatttgttcttcgcattcagaccacatcggac
tacacccctcaagaggctttcatgaatgccattactgaccttacctccgagctctcatta
tttgaagagaggtttaaggaagctatcaaagaaaaaaaggatggattggactaa
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