Amyelois transitella (navel orangeworm): 106138551
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Entry
106138551 CDS
T09957
Name
(RefSeq) probable ATP-dependent RNA helicase DDX55 homolog
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atra03009
]
106138551
Enzymes [BR:
atra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106138551
Ribosome biogenesis [BR:
atra03009
]
Eukaryotic type
Pre-60S particles
Helicases
106138551
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
106138551
NCBI-ProteinID:
XP_013195184
LinkDB
All DBs
Position
22:complement(join(8435500..8435641,8438502..8438593,8439094..8439221,8440114..8440333,8441339..8441579,8442793..8443271,8443655..8443849,8444353..8444649))
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AA seq
597 aa
AA seq
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MVNKIWSKVTPALSPSVLSCINKQGFRTMTPIQAAVIPLVLSCKDVAAEAVTGSGKTLAF
VVPMLEMLKKKEKDGPLRKDFVYAVIISPTRELATQIYKVIEQFLQEPDLGHLTLALLVG
GRAVDADVERLQKGAHIVVCTPGRFGDLLAERKHLNLAGRLKELEFLVLDEADRLLDLGF
NATLTTILQYLPRQRRTGLFSATQTKELQDLVRAGLRNPVIVSVKEKSTISTPLLLENYY
VIVEPQDKFLFLLNFIRNRKMVKGLFFLPTCACVDYWADVLPVFLPGIKVFAIHGKMKLK
RGKILEKFREADSTILLCTDLLARGLDIPEVEWVLQWEPPTSPSSLVHRVGRTARGGAPG
CSLLPLLPTEDAYVPFIRTNQMVELKDWRKSGDEIKITDKLRDKVLTILHSQQKQDRSIL
DKGQRAFVSHIQAYSKHECNLLLQCKELPLGHIATSYGLLKLPLMPEIKDEHRQQFVGPI
EQIDYNSIPYRDKQKEASRLQKLEEYKRTGVWPSKKKKKMTQTQPWEQTKQNKEERKQRR
KKRKELKKLDGEGKRRKRRAVTAAELESLAADVALMKKLKKRKITEEEFDRAFDVDK
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacaaaatttggtctaaagtaactcctgcgctatctccgtcagtgctatcatgt
attaacaagcagggatttagaacaatgacgcctatccaggcagctgtaatacctttagtg
ttatcttgcaaagatgtggccgcagaagcggtgactgggtcaggaaagaccctcgcgttt
gttgtgccgatgctggagatgttgaagaagaaggagaaagacggcccgctgaggaaggat
ttcgtatatgctgttattatatcgcccacgagagaactagccacgcaaatttataaggtc
atagaacagtttctccaagagcccgatttgggtcacctgacattagcacttctagtgggc
gggcgagcggtggatgccgatgtggaaaggcttcagaagggtgctcatatagtggtgtgc
actccggggaggtttggtgacctgttggctgagaggaagcacctcaatctggcggggcgg
ctgaaggaactggagttcctggtattagatgaagcagaccgtctgctggacctgggtttc
aatgcgacactcaccacaatcctccaatacctgcccagacaaagacgcacagggctgttc
tcagccacacagacaaaagaactccaagatctagtcagagctgggctccggaacccggtc
atagtcagtgttaaagagaaatcgaccataagtacaccgttattgttggagaattactat
gtaatagtggagccacaagacaaatttttattcttgcttaactttatacgtaatagaaaa
atggtgaaaggtttattcttcttgccgacttgcgcgtgcgtcgattactgggcggatgtg
ctgcccgtgttcctgcctggtataaaggtgtttgctatacacggcaagatgaagctgaag
agaggcaagatcttggaaaagtttcgggaagcggacagtacaatattgctgtgtactgat
ttgctggcgaggggcctggacatccccgaagtggaatgggtgctccaatgggagcctccg
acgtcgccgtcgtcgctggtgcaccgcgtggggcgcacggcgcggggcggagcgcccggc
tgctcgctgctgccgctgctgcccaccgaggatgcgtatgtccccttcatcaggaccaat
cagatggtggagttgaaggactggaggaagtccggcgatgagatcaagattactgataaa
ttgagagataaggttctaacgattctgcattcgcaacaaaagcaagaccgctcgattttg
gacaagggccagcgagcgttcgtgtctcacatacaagcgtactccaagcacgaatgcaac
ctgttactgcaatgcaaagagctgcctctggggcacatagcgactagttacggtctgctc
aagctgccattgatgccggagataaaagacgagcatagacaacagtttgttgggcccatt
gagcagattgactacaacagcatcccgtacagagacaaacagaaggaggcgagccggctg
cagaagctagaagaatacaagagaacaggcgtgtggccctccaagaagaagaagaaaatg
actcagacccagccgtgggagcaaacgaaacagaacaaagaggagaggaaacagcggcgg
aaaaagcggaaagagttaaaaaagctagacggtgaaggcaagcggcgcaagcggcgcgcg
gtgacggcggcggagctggagtcgctggcggccgacgtggcgctcatgaagaagctgaag
aagaggaagatcacggaggaggagttcgacagggccttcgatgttgataaataa
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