Amyelois transitella (navel orangeworm): 106138555
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Entry
106138555 CDS
T09957
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
atra03015
mRNA surveillance pathway
atra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106138555
09122 Translation
03013 Nucleocytoplasmic transport
106138555
03015 mRNA surveillance pathway
106138555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106138555
03041 Spliceosome [BR:
atra03041
]
106138555
Enzymes [BR:
atra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106138555
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106138555
Spliceosome [BR:
atra03041
]
Complex C
Other components
EJC/TREX
106138555
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106138555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106138555
NCBI-ProteinID:
XP_013195188
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All DBs
Position
22:complement(8479589..8480866)
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AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLSMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMSGVRVAVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDENDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgataacgacgatcttctcgattacgaagatgaagagcaggcagatcagcagacc
gctgatggagcaaccgaagcggcgccaaaaaaagaggttaaaggctcctacgtatctatc
cacagctccggctttagggattttctcctgaaaccagagatcttacgtgctatcgtcgac
tgtggttttgaacatccttcagaagttcaacatgagtgcattccgcaggcggtattgagc
atggatatcctatgccaagcgaaatcgggtatgggcaaaacagcagtgtttgttttggct
actttgcagcaattggagccttcggagaatcatgtatacgtgctagttatgtgccataca
agagagctagctttccagatcagcaaggagtacgaaagattttctaaatacatgtcggga
gttcgtgttgcggtgttcttcggtggcatgccaatacagaaggatgaggaggtgctcaag
acggcttgcccgcacatcgttgtcggtacccccggaagaattctagcgttagtgaacagt
aaaaaactgaatttgaaacatctgaagcattttatcctggacgagtgtgacaagatgctt
gaatctctagatatgaggcgggatgtacaggagatatttaggaatacccctcatggcaag
caggtcatgatgttttctgctacccttagtaaggagatccggccagtatgcaagaagttt
atgcaggaccccatggaagtgtatgtggatgacgaagccaagctgacactgcacggcctg
cagcagcactacgtcaagctcaaggaaaatgagaaaaataagaaattatttgagctcttg
gatgtgctagaatttaatcaagtggttatatttgtgaagtctgtgcaaagatgcatagct
ttagctcaactcctgactgaccagaacttcccggcaattggcattcatcgtaacatgaca
caagatgagcgtctctcacgataccagcaatttaaggatttccagaagagaattctagtg
gccactaatctttttggacgaggaatggatattgaaagagtgaatattgtattcaactat
gatatgcctgaggattcggacacatacctgcatcgtgtagctcgtgcgggccgttttggt
accaaaggtcttgcaattaccatggtgtctgatgagaatgatgccaaaattttgaacgag
gtccaagatcgctttgatgtaaatataacagagttgccggaagaaattgagttgtctact
tacattgaagggcgatag
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