Amyelois transitella (navel orangeworm): 106138877
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Entry
106138877 CDS
T09957
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03013
Nucleocytoplasmic transport
atra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106138877
03015 mRNA surveillance pathway
106138877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106138877
03041 Spliceosome [BR:
atra03041
]
106138877
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106138877
Spliceosome [BR:
atra03041
]
Complex C
Other components
EJC/TREX
106138877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Pinin_SDK_N
RSB_motif
Motif
Other DBs
NCBI-GeneID:
106138877
NCBI-ProteinID:
XP_060805153
LinkDB
All DBs
Position
18:complement(join(337294..337547,338764..338892,340699..340833,342778..343072,348444..348666,349165..349305,349379..349506))
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AA seq
434 aa
AA seq
DB search
MGTEVAISFSSLRAQLESEKSSLFKIDENIKKIQVSGRFPNDRFNNSSGEYVRAGNRLGG
RNSFPDAGNNYKNDELYNKRKHETKTVFSRLSARSQDSDGEEEGPGGKRARMPSAVTREL
PTRAAVLRAQGDDEQARTRNRRIFGSLLGTLQKFKQEEIVLQTKEEKKAQVERKIEEQAR
QEKEREQRERKTLYAEREHKKATIKALEAKMARVEEFERWEASQKHLANFILTKAKPHIY
WLPKKMTDKATEKLTSSRKFHEKCMSKKRQELQDELQRIEQRCLRPRAPGTKENLPQPRA
HVAKEEEGEKSRRNKFAADADQKEDSDADDHHDDNHHDDAHVEVQPRVEEVSDDLKADTI
TDQNTASIDANTSSDHNTSIDCDTSITNTSIEAAAIDPNTSMVIDGQNTQTDKHTTAVEE
DKEEMMNIDNLEHS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggggacagaagtagcaatatcatttagttctttacgtgctcaactagaaagtgagaaa
agtagtttatttaaaatagacgaaaatataaagaaaatacaagttagcggaaggtttcca
aatgataggttcaataattcttccggtgaatatgtgagagctggaaatcgattaggtggc
cgaaattcttttccagacgctggcaataattacaaaaatgatgagctatacaacaagcgg
aaacatgagactaaaactgtgtttagcaggctatcagctcgatcacaagacagcgatggt
gaggaagaggggcctggcggtaaaagagctcggatgccatcagcagtgactcgggaactg
cccaccagggccgcagtgctccgggcacagggggacgatgagcaggcgaggactcgtaac
agacgcatctttggatctctactcgggacgttacaaaagtttaagcaagaggaaattgtt
ttacaaaccaaggaagagaaaaaggcgcaagttgaacgcaaaatagaagagcaagcgcga
caagaaaaggaaagagaacagagagagagaaagactttgtacgcagagagagagcacaag
aaagccactatcaaggctctggaggccaagatggcgcgcgtggaagagtttgagcggtgg
gaggcgtctcagaaacacttggccaacttcatactgaccaaagcgaaaccacacatatat
tggctgccaaagaagatgacagataaggctacggagaagctgacttccagtagaaagttc
catgagaagtgcatgtctaagaagcggcaggagttgcaagatgagttgcagcggatagag
cagcgctgcctgcggccccgcgccccgggcaccaaggagaacctgccgcagccgcgcgcc
cacgttgccaaagaggaagaaggcgagaaaagcagacgcaacaagttcgcagcggacgcc
gaccagaaggaggacagcgacgctgacgatcatcacgatgacaatcatcacgatgacgcc
cacgtggaggtccagccgcgggtggaggaagtttcagacgacttgaaagcggacaccatc
acagatcagaacaccgccagtatcgatgccaacactagtagcgatcacaacacaagtatc
gattgtgacacaagtattactaacacgagtatcgaagccgcagctatcgaccccaacact
agcatggtcatagacggacagaacacacaaacagacaaacatacaaccgctgttgaggaa
gataaggaggagatgatgaatatagataacttggagcattcctaa
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