Amyelois transitella (navel orangeworm): 106139011
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Entry
106139011 CDS
T09957
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106139011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atra03021
]
106139011
Enzymes [BR:
atra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106139011
Transcription machinery [BR:
atra03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
106139011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
SURF2
Motif
Other DBs
NCBI-GeneID:
106139011
NCBI-ProteinID:
XP_013195797
LinkDB
All DBs
Position
13:complement(join(9025109..9025921,9026330..9030469))
Genome browser
AA seq
1650 aa
AA seq
DB search
MAPKPSALAGLNSVDPDSVQFLMYTDEEIRKLSVVKITNINSFDAMGNPTPGGLYDSHLG
PVRERLDLCATCENPLLHCAGHFGHIELPVVVINPLFLKSIYTIFRISCLKCFKIQMDDK
MKFLLKLQLQLIDAGHVTAALDLENFSGEVFKVDTETREQKTTKVIKKYKKLLKKTDAIT
EVFHNKNTDKLRSRILNGYFKSINIAKRCVYCQNKLIKVTTSEGKLMYNLSAEGIVGKGI
KILMPDEIKKYCTNIAENDGDILRHCLPVLNMSNCQPMTDIFFMTLIPVLPPCVRPCNVL
QGELTEHAQTNVYKAILAHAFGVRSVLHVLASEDQKKAIDELDSKPRFAYTSISGATPAE
KLHNGWQDLQKSVNNLLSCDSQGFTSLGLKQILEKKTGVIRMHMMGKRVNFAARSVITPD
PNVDIDEIGVPDAFAKKLTYPVPVTEFNVDELRKMVINGPNVHPGAEKLEIENGRTIRIP
ADSIQKRKSLAKRLLTPDEYKTSGLKIVHRHLINGDVMILNRQPSLHKPSMMAHRARILK
GEKTLRLHYANCKSYNADFDGDEMNAHFPQNEIARSEAYNIMSVRKQYLVPKDGTPLSGL
IQDHVISGVRMSLRGVFFSKTDYQQLVFQALTNHRGEIKLLPPTILKPRQLWSGKQVLST
IIINSIPKGKKYLSISGKAKISSKAWLKEKPRPWKAGGTPFIKENDMSEAEVIIRNGELL
CGVLDKTHYGATPYGLVHCMYELYGGDSSSALLSSFSKVFTFYLQWIGFTLGVKDILVVD
ESDLKRDDYIRSVRDSGRVAAIKATDLPLDVDEGKLKNIIEEMHTKDPKFRANLDRQYKT
MLDSYTNNINKVCLSEGLLEKFPYNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRPP
LMISGRSLPSFPPYDVSPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGY
LQRCLIKHLESLSVGYDHTVRDSDGSVIQYAYGEDGLDVLKCQYLKPEQLKFLDENSGAV
IADSAIDMLKEEADPKSIKKANKSLKKWKKKFGDPLRKERASGFIRFCAQAKQDIKLYDK
PTDQTRDPYYWELEKMWRSLEEEDRKQYEPKSCPDPIPGKYAPDYKLGVITEQLDGIIQS
YLKNRQVNMYDVCTDKEKFVEVMNAKYLASMAAPGEPVGLLAAQSIGEPSTQMTLNTFHF
AGRGDMNVTLGIPRLREILMTASAKLKTPNMDIPLRSDIQNVEKKAERLRQKLNRVTVAD
VLEKVDVECELVTRPERQLKTTMKFTFLPHSQYRSQYAVKPPQIIKHMENKFFAEMFSIV
KKQAKASAGIVWASEKKKERRKAAASDDEDGEVNAPTEKVNVDDDSSDDEAPNEDDDNTD
TKIRKKRNEEQEYEDPESGEEEKSDDEAELVDEPTENIEEKPSELDITAKELKVMSDVVN
SIKEAKNYSYDTKNHLWCELTVMFPIAFLRVDLSQAVRDAATKSIIHEVKNIKRAITNKE
KNMLYIKTEGINILQMFKYNDLLDLNKLYSNDIHAIANTYGIEAANKVIIKEIQNVFNVY
GIAVDPRHLSLIADYMTFNGVFEPMSRKGMEASSSPLQQMSFESSLIFLKEAVLNAKKDN
IRSASSCLMVGQPCRYGTGSFSLQHCSEIK
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggctccgaagccgtcagcccttgctggtttgaactcggttgaccctgattccgttcag
tttctgatgtatactgacgaagaaataaggaagcttagtgtggtcaagatcactaacatt
aattcctttgatgcaatgggaaaccccacgccgggaggtttgtatgactcgcatttaggt
cctgtcagggagagattggacttatgtgccacctgtgaaaatccattactacactgtgct
ggacattttggacatatagaactacctgtagttgttatcaatcctttgtttttgaaaagc
atttacactatattcaggataagctgcctcaagtgttttaaaattcaaatggacgataaa
atgaaatttctgttgaagctgcagttacagctcattgatgctggtcatgttacagctgcg
ttagatttggaaaacttttctggagaagtatttaaagtcgacacagagactcgtgaacaa
aagacgactaaagtcataaaaaaatataagaaattattgaaaaagacagatgcaataact
gaggttttccataacaagaatacagacaaactgagatcaagaatattaaatggttatttt
aaatctatcaatatcgccaaaagatgtgtatactgccagaacaaactaataaaggtcact
acatctgagggaaagctcatgtataatttgagtgctgaaggtatagtggggaagggaata
aaaatattaatgccggatgaaataaaaaagtattgcactaacattgctgaaaatgatggt
gacatcttacgtcactgcctcccagtcctcaacatgtcaaactgccaaccaatgactgat
atattttttatgaccttgattccagtacttccaccttgtgtcagaccatgtaatgttcta
caaggagaattgactgagcatgcacaaacaaatgtttataaagctatattagcacatgct
tttggcgtaaggtctgtattacatgttttagcatcggaagaccaaaagaaagcgattgat
gaactagatagcaaacctagatttgcttatactagcataagtggtgctactccagctgaa
aaattgcacaatgggtggcaagatcttcaaaaaagtgtcaataaccttctcagctgtgat
tctcaagggttcaccagtttagggttgaagcagattcttgagaagaaaactggtgttatt
aggatgcacatgatgggtaaaagagtaaattttgctgcccgatcagtaattacaccagat
ccaaatgtggacattgatgaaataggagtcccggatgcttttgccaaaaagctcacatat
cctgtaccagtaactgaatttaatgttgatgaacttagaaaaatggttattaatgggcct
aatgtgcacccaggtgctgaaaaattagaaatagaaaatggcagaacaataaggattcca
gctgattcaattcaaaaaaggaaaagccttgctaagagactgcttactcctgacgagtac
aaaacatctggcttaaagattgtacataggcacttaattaatggagatgtcatgatattg
aatcgtcaaccttctttacataaacccagtatgatggctcaccgagctagaattctgaaa
ggagaaaagaccctaagattgcattatgcaaattgtaaatcatacaatgctgactttgat
ggtgatgaaatgaatgctcacttccctcagaatgagatagcaagaagtgaagcatataat
atcatgtctgtaagaaagcagtaccttgtaccgaaggatggtacgccattgagtggtttg
atacaagatcatgtaatatcaggagtaagaatgtctttaagaggtgtatttttttctaaa
acagattatcaacagttagtatttcaagctctgactaaccacagaggtgaaataaaactc
cttcccccaacaattcttaaaccaagacagctgtggtcgggtaaacaagtactatctacg
attatcatcaacagtataccaaaaggtaagaaatacctttcaatatctggaaaagcaaaa
attagctctaaggcatggttgaaggaaaaaccaagaccttggaaagctggtggtacacct
ttcattaaagaaaatgacatgtctgaagctgaagttattatcagaaatggagaattactg
tgtggagtgttagataaaacacactatggtgctacaccttatggtttggtgcattgtatg
tatgaactgtatggaggagatagctctagtgcactgctaagttctttttcaaaagtattt
acattttatcttcaatggataggatttacccttggtgtaaaagatattttagttgttgat
gaatctgatcttaaaagagatgattatattcgctcagttagagactctgggagagttgct
gctatcaaagctactgatcttcccctggatgtagatgagggcaaattaaaaaatataatt
gaagaaatgcatactaaagatccgaagtttagagcgaatttggacagacaatacaaaaca
atgcttgactcttacacaaataatattaataaagtttgtctctctgaaggattacttgaa
aaatttccatacaacaaccttcagttaatggttcaatctggtgccaaaggttccactgta
aatactatgcagatttcttgcttgttaggtcaaattgaattagaagggaaaaggccgccg
cttatgatatcgggacgctccttacctagtttcccaccttacgacgtttcacccagggcc
ggcggatttattgacggtcgtttcatgactggaattcaaccccaagaattctttttccac
tgtatggcaggtcgtgaaggtcttattgatacagccgtaaaaacaagtcgctcaggttat
ttacaaagatgtttgatcaagcatcttgaaagcttgagcgtagggtacgatcatacagtc
cgtgattccgatggcagtgtcattcagtatgcttatggagaagatggtcttgatgttttg
aaatgtcaatacttaaaaccagaacaactgaaattccttgatgaaaattcgggcgctgtt
attgcggattctgctatagatatgcttaaagaagaagcagatccaaaatccataaaaaaa
gccaataagtcgttaaagaaatggaaaaagaaatttggcgatcccctacggaaagaaaga
gccagtggctttataagattctgtgcgcaagctaaacaagatattaagctttatgataaa
ccaacagatcaaaccagagatccttattattgggagttggagaaaatgtggaggtcacta
gaagaagaagatagaaaacagtatgaaccaaagtcttgccctgacccaatacctggcaaa
tatgccccagattataaacttggtgtaataacagaacaattggacggtataatacaaagt
tatctgaagaatcgtcaagtaaatatgtacgacgtttgtactgataaagaaaaatttgtc
gaagtgatgaatgctaaatacttagcatcaatggcagcgccgggtgagcctgtggggttg
ttagctgcacaatctattggagagccttccactcagatgacactgaatactttccatttc
gccggtcggggtgacatgaacgtgaccttaggtatcccacgtcttagagaaatcctgatg
actgcatctgctaaacttaaaactccgaacatggacattcctctcagaagcgacattcag
aacgtggagaaaaaagcggagcgactgagacagaaactgaacagggtaactgtcgcggac
gttttagagaaagtggacgtagaatgtgaattagtaactcggccagagaggcagttgaaa
acgactatgaagtttacgtttttgccacactctcaatatcgctctcagtatgcggtaaaa
ccgcctcaaattataaagcacatggagaacaaatttttcgctgagatgttctcgattgtt
aaaaagcaggcgaaagcgagtgctggtattgtgtgggcttcggagaagaagaaagagcga
cgtaaggcggcggctagtgatgatgaagatggagaagtgaacgcgccgactgagaaagtc
aacgttgacgacgacagctcggatgacgaggctcctaatgaagatgatgataatactgat
actaaaataaggaagaagagaaatgaagaacaagaatatgaagatcctgaatcgggagaa
gaagaaaaatctgacgacgaagcggagttggtcgacgaaccaactgaaaatattgaagaa
aaaccatcagaactcgatatcaccgctaaagaactaaaagttatgagcgacgttgtgaac
agtatcaaggaggcgaaaaattattcgtacgacacgaagaatcacctctggtgcgaacta
acagttatgtttcctatcgccttcttaagagttgatttgtcccaagcagtgcgcgatgcg
gccaccaaatcaataatccatgaggtcaaaaacatcaaaagagctataacgaacaaagag
aaaaatatgctttatatcaaaacagaaggtattaacattctacagatgttcaaatacaac
gatttgctagatttgaataagttgtacagtaatgacatacatgcgatcgcgaacacgtac
ggcatagaagcagcgaacaaagtgattataaaggaaatacagaatgtattcaatgtttat
gggattgctgttgatccgagacatttgtcgttgatagcagattatatgacgttcaatggg
gtttttgagccgatgagtagaaaaggaatggaggcatcttcttctccactacagcagatg
tcattcgagtcgtccctgatattcttgaaagaagcagttttgaatgcgaagaaggataat
atacgttcggcgtccagttgcctgatggtaggacaaccttgcagatatggaaccggttcc
tttagcttgcagcattgtagtgaaattaagtga
DBGET
integrated database retrieval system
