Amyelois transitella (navel orangeworm): 106139101
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Entry
106139101 CDS
T09957
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106139101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106139101
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
106139101
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_12
TPR_16
TPR_7
CFAP70_TPR_C
TPR_19
TPR_CcmH_CycH
TPR_11
TPR_6
TPR_17
ANAPC3
TPR_21
RMD1-3
ARM_TT21_5th
TPR_15
CABIN1_N
RPN7
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
106139101
NCBI-ProteinID:
XP_060800327
LinkDB
All DBs
Position
5:5310003..5313818
Genome browser
AA seq
1271 aa
AA seq
DB search
MADIKALLKEARKLVSEENFKEAQECCKNILRKDKQNYMGLVLLGKALQDTDQAPLAYQK
AIASKPDQLLAWQGLANYYEKKDGANMKIKLFSIYNEMLKLSTEEDRVYELILKTGQLGC
TLKHNEAITLIINYLSRDVDDKLQQAAEKQLVEILKRDVECKQEDIPLTLKILNKIYNED
PSDSLEIIYAKVILTKNDFNSAVVEIIELKYFSKNVILREWLCKQICKRYIENNSFSNFC
IEDYISRITEGIENSNYPGMLKSMIAYDKGMYLEAYKQCVPLVNYNQADPVEVTFIINCA
NKLRKWSIAQKLVTNFLTKAKDPDFFIDLKKFLFLSLSKQQKWNQAITIASEIPFDSLNK
DEKAALAECYIEGNQPVDHILAYLKTEECYTSLKAQLLLKQNKYTEVIDLLDKHSDHYLN
LFYIGKAYWYLGQHDQSLMNLLRAVKLNSEHAESFLFLGHYYKESNDLQRAKKCYEKAYS
LVDTNSETIKNLSETYIKLNMKEKDLDLLVKSEKKIKGNESWIDFRLGLHYLSKRDWENA
IIHFRNVIKSNKCDVTAFECLADAYYARGSFTSALRAYTKVMTLDSNKTAHCLTRIGYIH
SLLTEYEDAIATFEKVLKLDPYSLMALKGISETWIRVAKKKFEVKMYGRARDCAQNAIDF
IYLALKKNKQYTCLWKTLADTFILITRLPNKYAYVLLKNNDTSDNLVRKNKLELFPHALA
CYSRVAKQKQQLASYDLASTYLAYYYESKKEVNCNISFNLTLICIKEKPTLWRNWNLLGK
ICLFVKKYNIAQHCFIKALLVTRKWSVAKVWCNLGTLYLKLKLFKLANYCFWRGQSTLPS
HPHSWIGQGLIAEVIREEEAMDLFRHASRLGYHPESALGYADWVCRTLKSNKYKESPETK
YEIEGLYAITYAIDLIEWYSSFEPDNACANTILGILQERCGLIQAAYNSFQMAVKNADEE
NKNITLLNLGRIFLRMENYDEAIKTFKAITEASFDSTCGLALALYKNGLYEESYSVYDTA
LQWLSSDDEEQADMLVAMAGIMYIFKGADDAKTILFHSINVTKKKPTAYCLFAICSLGLL
HSDQSLSKLALGELHKYEKDNAFGFDIGFLKSYLFVCENNINEAIKILSDSLHDFPSNAL
LWFCMSQYCLRASDTKAKIASSCAQRALCSSHNYDHCLESAKMIATASIAEHIAGDHIKA
LILAKEGLHMYPQQGEIWAALIFSLIPIKQWMDKKDWLLSAASHMRRNLVVSRPLIRWLN
LIEKKLQSRVK
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggcagatataaaagcgttattaaaagaggcaagaaaacttgtcagtgaagaaaatttc
aaagaagcacaagaatgttgtaagaatattttgcgaaaagataaacaaaactatatggga
ctagtgcttcttggaaaagcacttcaagatacagaccaagctccattagcataccagaaa
gcaatagcaagtaaaccagatcaacttttagcatggcaaggcttggcaaattattatgag
aaaaaagatggtgcaaatatgaaaataaaattattttctatatacaatgaaatgttgaaa
ctttcaactgaagaagatagggtatatgaattgatattaaagacagggcaacttgggtgt
acactaaaacataatgaggctataactttaattattaactatttgagtagagatgttgat
gacaaactacaacaagctgctgaaaaacaacttgtggagatattaaaaagagatgtagag
tgtaaacaggaagatattcctctcactttaaaaattcttaataaaatttacaatgaagat
cccagtgattctttggaaattatttatgccaaagtaatacttacaaaaaacgattttaat
tctgcagttgtagaaataattgaacttaaatatttctctaaaaatgtgattttgagagaa
tggctttgcaaacagatatgtaagagatatattgagaacaattcttttagtaatttttgt
attgaagattatatatcaagaataactgaaggaatagaaaattccaattatcctggaatg
ctaaaaagcatgattgcttatgataaaggtatgtatttggaagcttacaagcaatgtgtt
ccattagtaaactacaatcaagcagaccctgtagaagtgactttcataataaactgtgct
aataagctgaggaagtggtctattgcacaaaagcttgttacaaattttttaacaaaagct
aaagatcctgattttttcatagacttaaagaaatttttatttttgtcactgagcaagcaa
caaaagtggaatcaagctattacaatagcttctgaaataccatttgattctttaaacaaa
gatgaaaaagcagcattagctgaatgttacattgaaggtaatcagcctgttgatcatatt
ttagcatatttaaagacagaagaatgttacacatcactaaaagcacaactgcttttaaag
caaaacaagtacacagaagtaatagatctcctagacaaacacagtgaccactaccttaat
ttattttacattggtaaagcatattggtatttaggccagcatgatcaatccttgatgaat
cttctgagagcagttaagttaaactctgaacatgcagaatcatttcttttccttggtcat
tattataaagaaagtaatgatttgcagagagcgaaaaaatgttatgaaaaagcatatagt
ttagtagatacaaacagcgaaactataaaaaatctgagtgaaacttacatcaaattaaac
atgaaggaaaaagacttagatttgttagtcaaatcagaaaaaaaaattaaaggaaatgaa
tcatggattgattttcgtctgggtttgcattatctcagcaaaagagattgggaaaatgcc
atcatacattttagaaatgtcataaaaagtaataaatgtgatgttactgcatttgaatgc
ctagctgatgcttattatgctcgaggctcattcacatctgcattacgagcttacacaaaa
gtgatgacactagattcaaacaaaactgctcactgcttaacaagaattggatatatacat
tcattactgacagagtatgaagatgctatagcaacttttgagaaagttctaaaactggac
ccatattcattaatggctctcaaaggaatctctgaaacatggataagagtggcaaagaag
aaatttgaagtaaaaatgtatggtagggcaagagattgtgctcaaaatgctattgatttt
atatatttagctctgaaaaagaataagcaatacacatgcctttggaagactctggctgat
acatttatactcattacccgacttccgaataaatatgcttatgtattacttaaaaacaat
gacacttctgacaatcttgtcaggaaaaacaaacttgaattatttcctcatgcacttgca
tgttattctcgtgtagcaaaacaaaaacaacaattggcatcctatgatttagcatccacc
tatcttgcatactattatgaaagtaaaaaagaagtaaattgcaatatttcatttaattta
acacttatttgtataaaagagaaaccaacattatggcgcaactggaatctacttggaaaa
atttgtctatttgtaaaaaaatataacatagctcaacactgttttataaaagcattatta
gtgactcgtaaatggtctgtggctaaagtgtggtgtaatttggggacactatatttaaaa
ttaaagctttttaaattggcaaattactgtttttggagaggtcagtcaacattgccatcc
catcctcatagctggattggtcaaggcctgattgcagaagtgattagagaagaagaagca
atggatttgtttagacatgcttctcgtctaggctaccatccagaaagtgctcttggatat
gctgactgggtgtgtcgcactttaaagagcaacaaatataaagagagcccagaaactaaa
tatgaaatagaaggtctttatgcaattacatatgcaatagacctaatagaatggtattct
agttttgaaccagataacgcatgtgctaacactattctcggaatattacaagaaaggtgt
ggccttattcaagcagcttataactcctttcaaatggcagttaaaaatgctgacgaagaa
aataaaaacattacacttttaaatcttggaagaatttttttgagaatggaaaattatgat
gaagcaattaaaactttcaaagccataacagaagctagctttgattcaacttgtggatta
gctctggctctctataaaaatggtttatatgaagaatcatattctgtatatgatactgcc
ttacaatggcttagcagcgatgatgaggaacaggctgatatgttggtggccatggcaggg
attatgtatatttttaaaggagctgatgatgcaaaaaccatactatttcacagcatcaat
gttactaaaaaaaaacctactgcctattgtttatttgctatttgttcattagggttattg
cactctgatcaaagtctctctaaacttgctttaggtgaattgcacaaatatgaaaaagat
aatgcatttgggtttgatataggattcctgaaatcatacttatttgtatgtgagaacaac
ataaatgaagctattaaaattctgagtgattcacttcatgattttcctagtaacgctttg
ttatggttttgtatgtctcagtattgtcttagagcatctgataccaaagcaaagattgcc
agtagttgtgcccaaagagcattatgttcatctcacaactatgaccactgcttagaatct
gcaaagatgatagcaacagctagtattgctgaacatattgctggagatcatataaaagct
cttatcctggcgaaggagggcttgcatatgtaccctcaacaaggagaaatatgggcggct
ctgatattttcattaattcccatcaaacaatggatggataagaaagattggttactgagt
gcagctagtcacatgagacgaaatcttgttgtttcgcgccctttgatcaggtggttaaat
cttatagagaaaaagttacaaagtagagtaaaataa
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integrated database retrieval system
