| Entry |
|
|---|
| Name |
(RefSeq) pre-piRNA 3'-exonuclease trimmer
|
|---|
| KO |
|
|---|
| Organism |
atra Amyelois transitella (navel orangeworm)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:atra00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106139348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:atra03019]
106139348
Enzymes [BR:atra01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106139348
Messenger RNA biogenesis [BR:atra03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106139348
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
5:complement(join(3557488..3557536,3559726..3559824,3560375..3560463,3562269..3562355,3562526..3562668,3564464..3564591,3564849..3565174,3565433..3565568,3566979..3567130,3567236..3567470,3568943..3569070))
|
|---|
| AA seq |
523 aa
MEITKHNFNDQIETITEQILDSCFIGFDAEFSNLLTGKKFKNRLFDTNEDRYNLLKNHVG
DIMITQIGLTLFKFNTFAESYVAHTYTFHLCPQTLGDIDQSCKFQASTLKFLCRHNFNYN
KFLYEGIPYLSKVELEMLEQKLSDDTLFSYIKQGLDDAEMRLIQSYCSAITHWFLHTNED
SICLDVQNPLMRYIMHLEFRERYPELLTANILGDDNKIMVYRYEIEGAENTPKEKIENDF
MAYITGFSKIICLIKTELKPVIGHNMFMDTVLLHNQFIGPLPQKYTVFKKNVSEVFPVLF
DTKYISYVMKAKLTKDEQWQSNSLQDLYEFFSKGQCKKLELGINSIKLGTEFGPKQTYHE
AGWDSYCAGYCFLRLGHWAHGESMGLYRLTSPIEKLSSLLQFRNKINVIRGAMSHMNLAE
PDPAVGRPKILYLMPQKTREIDFNQVVYDLTDIGEVDIKPYGKKACLVAAQTHHIANRIL
QHYSFFKDYKITYFNAFRHSPLSKFAFWGSALITALYLLQKKI |
|---|
| NT seq |
1572 nt +upstreamnt +downstreamnt
atggagatcacaaaacacaacttcaacgatcaaattgagaccatcaccgaacaaatatta
gattcatgtttcataggatttgatgctgaattcagcaacttattgactggaaagaagttc
aaaaacaggttgtttgacacaaatgaagaccggtacaatctacttaaaaatcatgtaggg
gatattatgattacacaaataggacttacattattcaaatttaacaccttcgctgaatca
tatgtggcacacacatatacattccatctgtgtccacaaacattaggggacattgatcaa
tcttgcaaattccaggcatctactttgaagttcctgtgtaggcataactttaattataat
aagtttctatatgagggaattccatatctcagcaaagtggagttggaaatgctggaacaa
aaactatcggatgatacactatttagttacataaaacaggggctggatgatgcagaaatg
agacttatccaaagctactgctcagctattacacattggttcctccacaccaatgaagac
tccatatgcttagatgtgcaaaatccactaatgcgttacattatgcacttggaattcagg
gaacggtaccctgaactgctcacagccaatatcttaggcgatgacaataagataatggta
tacagatatgaaatagaaggagccgaaaatacaccgaaggaaaaaatagaaaatgatttc
atggcatatataacagggttttcaaaaataatctgtctgataaaaactgaactcaaacct
gtcatcggtcataacatgtttatggatacggtgctactacacaatcaatttatcgggcca
ttgccacaaaaatatacggttttcaaaaagaatgtatctgaagtctttccggtgttgttt
gatacaaaatacatttcatatgtaatgaaggcgaaattgacaaaagatgagcaatggcaa
tctaattcattgcaagatttgtacgaattcttctctaaaggccaatgtaagaagttggag
ttaggcataaacagcataaaactgggcactgagtttggcccaaagcagacttaccacgag
gctggctgggactcctactgcgctggttactgtttcctccggctggggcactgggcccac
ggtgagagcatgggcttgtatcggctgacatcgcccatagagaagctctccagtctatta
caatttcgcaataagatcaacgtcattcgtggcgccatgtctcatatgaacttagccgaa
ccagacccagctgttggcagacccaaaatcctatacttgatgcctcagaagacacgtgaa
attgatttcaatcaggtggtgtatgatctgacggatataggagaagtggacatcaagcct
tatggaaaaaaagcgtgcctggtggccgcccaaacacaccacattgccaacagaatacta
cagcattattcctttttcaaagattacaagatcacatattttaatgccttccgacattcg
ccactgagcaaatttgcattttggggtagtgcgctaatcactgcactgtatttgctgcag
aagaaaatttaa |
|---|
