Amyelois transitella (navel orangeworm): 106139894
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Entry
106139894 CDS
T09957
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106139894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atra03019
]
106139894
Messenger RNA biogenesis [BR:
atra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106139894
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GFIT
Motif
Pfam:
TPR_14
TPR_19
ANAPC3
TPR_2
TPR_16
ANAPC8
Prefoldin_3
ivWA
Motif
Other DBs
NCBI-GeneID:
106139894
NCBI-ProteinID:
XP_013196858
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All DBs
Position
22:2517624..2519327
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AA seq
567 aa
AA seq
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MANNKDREEPVVQAKQCYSKKDFSGTLIHLNELENLVGTNHKRVQHNKAVVEFMASDMKN
LDKFKKAIALLTGLNFPDIELKEWNSPFLIYNYAVVLYHSRYYYQCTVLLEKLLSSKNIK
DAKLQQQAILLLLEATLCRRTYDKTLEVAKTYGDILKSNNEVSDLFERLVNRAQLLLGQK
IKLKLKGDFIENIFIIAQQQYLNGDVKEAADTLGQYKTLKHNYNLKTQGEDIWAAINNNL
GVIYLSIKKPFLASKYFQHAVKEHFKAMESNDSERLISCRDRPLYVFNLGLALLAANNSE
GAFECLVEAARHYPNNPRIWMHLAECCVKKCCGEEVQQYTVKKLGSGSHTRILLARENKE
KYSTSGESFAIPSLSLEFAALCLRNAITLLPSQDSTAENSGFLIQAPPGPPINMKQRNEL
KNSTLVLQSYVLLNLQDPLSALMSANELLSQPDVSSSHKAWAHIYAAEALINLDRITDAV
EHLQPPMIHDLVSVMPCQMRDMIAVSVWAKAAVCHILRGDLVTARKILLQINSPRVLPLQ
MYLEICTGNIENCHTILKKLRFASASP
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggctaataacaaagaccgtgaggaacctgttgttcaggcgaagcaatgttattcaaag
aaagacttctcagggacacttatacacttaaatgaacttgaaaatctggtgggaaccaac
cataaacgtgtgcagcataataaggcggttgtcgaattcatggctagtgacatgaagaat
ctagacaagtttaagaaggctatagctttgctcacaggactgaacttcccagacatcgaa
ctcaaagaatggaactcaccatttctgatatataattacgctgtcgttttataccattca
aggtactactaccaatgcactgtgttacttgaaaaacttctcagttccaaaaatattaaa
gatgctaagcttcaacaacaagctatcctattgttgctagaagcgacactctgtcggaga
acctatgataagactttagaagttgctaaaacatatggagatatattgaagagtaataat
gaagtatctgatttatttgaaagacttgtaaacagggctcagcttttactagggcaaaaa
attaaactgaagttgaaaggtgatttcatagagaatatattcataattgcacagcaacaa
tatctcaatggagacgtgaaggaagctgcagacacacttgggcaatacaaaacgttaaaa
cataattacaatttgaaaactcaaggtgaagatatttgggccgctattaacaataacctt
ggtgttatatatttgtccatcaagaaaccatttttggcatctaagtactttcagcatgca
gtgaaagagcacttcaaagccatggagagtaatgacagtgaaagactgatatcttgcaga
gatcgaccactctatgtcttcaatttgggacttgcactacttgcagcaaataactctgaa
ggagcttttgaatgtctcgtagaggcagcacgtcactaccctaacaaccctcgaatatgg
atgcatttagctgaatgttgtgttaaaaaatgttgcggggaagaggtccagcagtatact
gtcaaaaaacttggaagtggttcacacactcgtattttgttggctagagagaacaaggag
aaatattctacttctggagaatcattcgctataccgtcactatctctagaatttgccgct
ttgtgtttacgtaatgccatcactttgttgccgagtcaggattcaactgctgagaattca
gggtttctcattcaggctccaccaggcccacctattaacatgaaacagaggaatgaacta
aaaaactcaacattagttttgcaaagctacgtgttgttaaacctacaggatccattatca
gctttgatgagtgctaatgagcttctgagtcaaccagatgtgtctagtagtcacaaagct
tgggcccatatttatgcagctgaagcattaattaatttagacagaataactgatgctgtg
gaacacctgcagccaccaatgattcacgacttggtatctgtaatgccatgtcaaatgaga
gacatgattgctgtatctgtttgggcaaaagctgccgtctgtcatatattgaggggtgat
ttggtgactgctagaaaaatattgcttcagattaactcaccgagggtgttgccactacaa
atgtatttggaaatttgtacggggaacattgagaactgtcacactatactaaagaagctc
agatttgctagtgcatctccttga
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