Amyelois transitella (navel orangeworm): 106139944
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Entry
106139944 CDS
T09957
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra04382
Cornified envelope formation
atra04512
ECM-receptor interaction
atra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106139944
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106139944
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106139944
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atra04147
]
106139944
00536 Glycosaminoglycan binding proteins [BR:
atra00536
]
106139944
Exosome [BR:
atra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106139944
Glycosaminoglycan binding proteins [BR:
atra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106139944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106139944
NCBI-ProteinID:
XP_060801161
LinkDB
All DBs
Position
2:complement(join(6903609..6903866,6904278..6905509,6905615..6907126,6908055..6908511,6908818..6909201,6909342..6909809,6909963..6910256,6910442..6910663,6910753..6910995,6911597..6912034,6913876..6913915,6914030..6914049))
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AA seq
1855 aa
AA seq
DB search
MAVLVLWLVAGLAPLLGVNAQDYLQWQPQPDRTGDGFRVQPNLYNQYYRGNLGNSPNNDN
EIYNDRSYGLSGRPDPPSSWDRPRTPDPSPTWNPGASRLTPSLSPGVASSWDRQRQNEFG
APTNVLVGGNNYDVYDPVTKQRTSTERNCTAPGCCTPKCFAEKGNRGIPGIPGPPGPRGL
QGHEGVEGPQGLKGEKGQIGPQGPRGPKGEKGKTGERGFDGSVGAPGPQGDFGFPGHPGR
DGCNGTDGVPGPSGPPGIQGPRGIPGPRGDKGDKGEPAAAGRYPKGQKGEPGDNGLNGRE
GPMGPPGRDGLKGPKGDMGPIGLPGEKGDKGIRGAKGQAIPGEKGDRGDKGPKGRDCDTA
PATNSNVTYISGEPGAPGDKGDKGAMGERGDDGIPGEPGRNGTPGKKGSKGIIGNPGERG
RDGPYGDPGPMGRKGDTGSLGIAGLPGRPGYKGEPGRDGAPGPRGLRGVPGAPGGRTGSR
GPPGPQGPRGYPGAPGPSGNDGRPGDRGETGPMGPTGGPGEPGTPGIEGPAGRKGEKGEQ
GQMGIQGSVGPRGYDGPQGPQGPMGPKGEDGISIPGGKGAGGLPGYSGQKGQKGDKGYPG
IRGVPGDSKLGRPGMPGPVGNKGDKGERGVPGGDGRPGAPGPKGDIGGRCNECWPGQAGL
PGERGNDGPSGPQGDRGPPGPPGVPGQRGADGVDGRPGAQGPPGEQGDSGPIGAPGPAGK
DAICSFELVKGDKGEKGDMGPIGYTGPKGDRGLPGPKGNIGSVGMPGQKGDIGYMGSPGA
DGTPGTPGIPGSQGVDGRSIKGQKGMEGERGLKGNKGEFGFKGLKGEPGYCPISSLINTK
GDRGLPGPQGPQGPPGDMGPKGDKGEMGLPGLKGNTGYPGLPGPVGPRGLPGQRGDKGDM
GPKGISGTTGSTGPRGIPGIPGSKGDKGEQGLAMAGPPGPPGLVGNPGLPGMRGPAGIPG
KDGPPGLPGLRGEKGEIGITGLMGPPGRQGDKGEPGPVGAMGLPGRPGMPGRDGQKGHDG
LPGKSGRPGVIGLPGQKGDKGSPGPEGLRGFPGLRGKAGLPGSPGLNGAPGDKGNKGAQG
FPGLNGNPGTDGLPGIPGQPGDKGDQGLAGPPGMPGLRGFDGEKGDKGERGFNGSKGEPG
FAADKGDKGNPGRPGMDGMPGLNGEMGDKGDRGEQGLPGLGYRGLPGIKGDRGLPGASGL
PGMPGDKGFPGYAGRPGEKGDRGIPGDNGPPGLPGMDGAPGSEGAPGLVGLKGAKGDKGN
EGRAGRDGFYGLKGDAGLPGFEGPKGDIGYPGPKGDQGPPCQQIKGIKGDTGAPGFPGAK
GQKGEIGPIGQPGISGDKGDKGDLGFPGPLGPMGLPGEKGVPGPVGPQGTPGRSTVCEKG
IPGLPGKNGRPGMPGAPGLIGERGLPGLPGVAGEPGTPGYPGLPGERGEKGKEGVAGPPG
HDGQPGVPGPPGIIGVKGDKGDQGPPGYGLPGAQGDQGLPGMPGDRGQKGDKGEIGFQGR
QGPPGPIGLQGVPGERGPTGAMGFPGAIGQKGDKGERALIVYGAKGDRGPPGPPGLIGPP
GQDCIPGIPCIDGLPGEKGDKGEPGPIGQPGPQGPPGREGLQGDRGETGQIGLPGPQGIP
GTPCLKTDYLAGDLLVRHSQTAQIPTCEPGHIKLWDGYSLLYVDGNEQAHNQDLGQAGSC
VRKFSTMPFLFCDLNNVCHYSSRNDRSYWLSTSEALPMMPVESNEIMRHISRCVVCEVPA
NVIAVHSQTQDLPDCPDGWSELWIGYSFAMHTGAGGQGGGQALASPGSCLQDFRASPFIE
CNGEGGTCHHFANKLSFWLTTIEDREQFAVPRRSTLKSGDITTHISRCAVCIKKT
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcctcgtactgtggttggtagctggactggcgccgcttttgggagtgaacgca
caagactatcttcaatggcaaccacaacccgatcggacaggagacggttttagagttcag
ccaaatttgtacaaccagtattatcggggaaatttgggaaactcccctaataacgacaat
gaaatctataatgatcgatcatacggattgtcagggcgtcccgaccctccgtcctcttgg
gatcggccgcgtacgcctgacccttcgccaacttggaaccccggcgcatcaaggttgacc
ccgtcgctgtcacccggtgtagcatcgtcctgggatcgccaacgacaaaatgaatttggt
gcacccacaaatgtgttagttggtggcaataattacgatgtctatgacccagttacaaag
cagcgaacttctacagaacgtaattgcacggcgcctggatgttgcacaccgaagtgtttc
gcagaaaaaggcaacagaggaattcccggtataccaggtcctccgggcccgagaggtttg
cagggccacgaaggtgtggaaggtcctcaaggtttaaagggcgaaaaggggcaaatagga
cctcaaggaccccgtgggccaaaaggtgaaaaaggcaaaactggagaaagaggattcgat
ggatcagtgggagcacctggtcctcaaggtgactttggatttcctggccatccagggaga
gacggatgcaatggtaccgacggcgtgcctggcccatcgggcccaccgggtatacaagga
ccccgtggtattcccggtcccagaggagataaaggtgacaaaggagaaccagccgctgct
ggccgatatccaaaaggtcaaaaaggggaaccgggagacaacggattaaatggaagagaa
ggtccaatgggtccgcctggtcgcgatgggcttaaagggcccaaaggagacatgggacct
ataggattgccaggcgaaaagggagataaaggtatcagaggcgcaaagggtcaggcaata
ccaggtgaaaaaggtgacagaggggataaaggacctaaggggcgtgattgcgacacagca
cctgcaacaaatagcaatgtaacatacatatctggagaaccgggggcacctggagataag
ggagacaagggggcgatgggggaaagaggcgatgatggaatccctggcgaaccaggccga
aatgggacaccggggaagaaaggctccaaaggcataataggaaaccctggtgaacgtggc
cgtgacggaccttacggtgaccctggtccgatgggaagaaagggggatactggaagcctt
ggtattgcgggtcttcctgggcgccctggttacaaaggggaacccggccgcgacggagct
ccagggccaagaggtcttaggggtgtgccgggggcacctggaggtcgtactggttcacgt
ggtccaccgggtcctcaagggcctagaggctacccgggggctcctggacctagcggcaat
gacggcagaccaggagacaggggagaaacaggtccgatgggtcctacaggagggcccggt
gaaccaggcactccaggtattgaaggtccagccggccggaaaggcgaaaaaggagaacag
gggcaaatgggaatacagggaagtgtaggtccccggggatacgatggaccacaaggccct
caagggccaatgggacctaaaggcgaggatggcatttctataccaggagggaaaggtgcc
ggtgggttacctggttattcagggcagaagggtcaaaaaggagataagggctaccctgga
ataagaggagttccgggcgattcaaaactcggtagaccaggaatgccaggtccggttgga
aataagggtgataaaggagaaagaggagtaccaggtggcgacggtcgacctggcgctccg
ggtccaaaaggcgatattggtgggcggtgtaacgaatgctggccgggacaggcgggcctg
cccggggaacgcgggaatgacgggccgtcgggtccgcaaggagacaggggcccacccggc
ccacctggtgtgcctggacaacgcggtgctgatggcgtggatggacgacctggagcgcaa
ggaccaccgggcgaacaaggtgacagtgggcctataggagcaccaggtccagctggaaaa
gatgcaatttgttcatttgaactggtgaaaggtgacaaaggcgaaaaaggtgacatgggg
ccaataggttacactggacccaagggagatcgaggattgccgggtccaaaaggaaatatt
ggaagtgttggaatgcccggacagaaaggcgatataggttatatggggtcacctggagct
gacggcacacctgggacacctggtataccaggttcgcaaggagtggatggtcgcagtatc
aagggtcaaaaaggaatggaaggagaaagagggcttaagggaaacaaaggagaatttggt
tttaaaggattgaaaggtgaaccaggctattgtccaattagtagcctaataaacacaaaa
ggcgatagaggtttaccgggcccacaaggacctcaaggaccaccaggagatatgggcccg
aagggagacaagggtgaaatgggattgcctggactaaagggtaatacaggctatcccgga
ttgcccggtcctgttggtcctcgaggacttcctggacaaagaggcgataaaggtgatatg
gggccgaaaggtatatcaggaacgactggcagcaccggtcctcgagggatcccaggaata
ccaggatcgaaaggagacaaaggcgaacaaggccttgctatggctgggccccccggcccg
ccaggtctggtaggcaatccaggacttccgggtatgagaggacctgcaggtattccaggg
aaagatggtccaccaggtttaccaggtttaaggggtgagaagggtgaaatcggaattacg
ggactaatgggaccccctggtagacaaggagataaaggtgaaccgggtcctgtcggggca
atgggtttacctgggagacctggtatgccaggacgagatgggcaaaaaggacacgatgga
cttcctggaaaatccggtagaccaggtgtaataggtttaccaggccaaaaaggagataaa
ggaagtcctggccccgaaggactcagaggattcccaggattgcgtggaaaagcgggactt
ccgggaagtccaggtttgaatggagcaccaggcgataaaggcaataagggagcacaagga
tttcctggtttgaatggaaatcctggcacggatggacttccaggaattcctggacaacca
ggtgacaaaggagatcaaggacttgctggtccaccaggaatgccaggactccgtgggttt
gatggcgaaaaaggagataaaggcgaaagaggctttaatggatctaaaggggaaccaggc
tttgctgctgataagggagacaaaggaaatccagggcgacctggtatggatggaatgcca
ggattaaatggggaaatgggagataaaggtgatcgcggagaacaaggcttgccaggtctt
ggatatcgtggcctacctggtattaaaggcgatcgtgggcttccgggagccagtggattg
cctggtatgcctggagataaagggttccctggatatgcaggtcgaccaggagaaaagggt
gatagaggaattcccggtgataacggtccaccaggactacctggcatggatggtgctcca
ggatccgaaggcgcacctggtctagttggattgaaaggagccaaaggcgataagggtaat
gaaggaagagctggccgtgacggtttttatgggttgaaaggagatgcaggcctaccaggt
tttgaaggtccaaagggtgatataggttatcctggtccaaaaggagatcaaggacctcca
tgccagcaaataaaaggaattaaaggtgacacaggtgcaccaggattcccaggagcaaag
ggtcaaaaaggcgaaataggaccaataggccagccaggaataagtggtgacaaaggagac
aaaggcgacctaggatttcctggccccttgggacctatgggcttgcctggcgaaaaagga
gtgcctggtccagtaggcccacaaggcacaccaggcagatcgactgtatgtgaaaaaggt
ataccgggtcttccaggtaaaaatggtcgacctggtatgccaggcgcacctgggttaata
ggcgaaagaggtttaccaggtcttccaggagtagctggtgaaccggggacacctggatat
ccgggactaccaggagagagaggtgaaaagggcaaagaaggggtagctggtcctccagga
catgacggtcaacctggtgtacccgggccaccaggtataataggggtaaaaggtgataaa
ggtgaccaaggtcccccaggatacggcttaccaggtgcacaaggagaccaaggattaccc
ggtatgcctggcgatagagggcaaaagggtgataaaggtgaaattggattccaaggtcgt
cagggacctccaggaccaataggcttgcaaggtgtgccaggagaaagaggacctactggt
gccatgggattccctggagctattggtcaaaaaggagataaaggagaaagagcgcttatc
gtttacggagctaaaggcgaccgtggccctccaggtccacctggattaataggtcctccc
ggacaagattgtatccctggtattccatgcattgatggtcttccgggtgaaaagggagac
aaaggcgaacctggacctataggacaaccaggtccacagggtcctccaggtagagaaggg
ttacaaggtgatagaggagaaactggccaaatcggtttaccaggaccacaaggaattcct
ggaacaccttgcttgaaaactgactacttggcaggagatttacttgttcgtcatagtcag
actgcgcaaattccaacctgcgaaccaggccatataaaattatgggatggatactcctta
ctgtacgtggatggaaacgaacaggcacacaatcaagatttaggacaagcaggatcttgc
gtcagaaagtttagtacgatgcctttcttattctgtgacctcaataatgtttgtcattat
tctagtcgaaatgatcgtagttattggttgtcaacaagcgaagcactgcctatgatgccc
gttgaaagtaatgagattatgagacacatttcaagatgtgttgtgtgcgaagttccagct
aatgtaatagctgtgcatagccagacacaagatttgccagattgccctgatggctggtcc
gaactttggatcggatacagttttgcaatgcacacgggcgccggaggacaaggtggtggt
caagctttagccagtcccgggtcttgtttacaagatttccgcgcgtcgccgttcatagag
tgtaatggtgaaggtggcacttgccatcatttcgctaacaaactcagcttctggctgact
accattgaagacagagaacagttcgcagtcccacgtcgaagtacactcaaatcaggagac
ataacgacacacatatcaaggtgtgccgtttgcatcaagaaaacatag
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integrated database retrieval system
