KEGG   Amyelois transitella (navel orangeworm): 106140009
Entry
106140009         CDS       T09957                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106140009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106140009
   03019 Messenger RNA biogenesis [BR:atra03019]
    106140009
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     106140009
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     106140009
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCHC zf-CCCH_4 zf-CCCH_3 zf-CCCH_RBM22 zf-CCHC_2 Nab2-like_zf-CCCH_ zf-CCCH_DUS3L
Other DBs
NCBI-GeneID: 106140009
NCBI-ProteinID: XP_013196981
LinkDB
Position
11:complement(join(60941..61186,61644..61884,62497..62773,62961..63063))
AA seq 288 aa
MEVIVANVDHIKFDIDFALEEQYGALPLPFPGMDKSTAAVCEFFSQPGGCGNGPQCPYRH
VRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYARFNACHNKECPFLHIDPES
KIKDCPWYDRGFCRHGPHCRHRHVRRVLCINYLSGFCPDGPKCKYMHPRFELPAPPEQTK
DAKRQPVCHYCSEVGHKASSCHKIPAEQREAAQRQEEARYRALGYVKPAGEAEEGPRPRA
FVHKPLEEVTCFKCGTKGHYANKCPKGHLAFLSSQVNQNNQQMYKKPN
NT seq 867 nt   +upstreamnt  +downstreamnt
atggaagttatcgttgcaaatgtcgatcacatcaaatttgatattgatttcgccttagaa
gagcaatatggagctcttcctttaccttttcctggaatggacaaatcaacagcagctgtg
tgtgaattttttagccaacctggtggttgtggcaatggccctcaatgtccctatagacac
gtccgtggggaccgaaccgtggtctgcaaacattggcttcgaggactttgtaaaaaaggc
gaccagtgcgagttcctacatgaatatgacatgaccaaaatgcctgaatgttacttctat
gctagattcaatgcctgtcacaacaaggaatgtccattcttacacatagatccagagagc
aaaatcaaagattgtccctggtatgatcgaggtttctgccggcacgggcctcactgccgc
caccgtcacgtgcgccgcgtgctctgcatcaactacctgtccggcttctgtccggacggg
ccaaagtgcaagtacatgcacccccgcttcgagctgcccgcgcccccggagcagaccaag
gacgccaagcgccagcctgtgtgccactactgctctgaagtgggccacaaagcgtccagt
tgtcacaagatacctgcagaacaaagagaggcagcacaaagacaagaggaagcccggtac
cgcgcgctgggctacgtgaagccggccggcgaggcggaggagggcccgcggccgcgcgcc
ttcgtgcacaagccgctggaggaggtcacgtgcttcaagtgcggcaccaagggccactac
gccaacaagtgccccaagggacacctggctttcctctctagccaggttaaccagaataac
cagcaaatgtacaaaaaacccaactag

DBGET integrated database retrieval system