KEGG   Amyelois transitella (navel orangeworm): 106140177
Entry
106140177         CDS       T09957                                 
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106140177
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106140177
   03041 Spliceosome [BR:atra03041]
    106140177
   03009 Ribosome biogenesis [BR:atra03009]
    106140177
   03016 Transfer RNA biogenesis [BR:atra03016]
    106140177
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106140177
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     106140177
Spliceosome [BR:atra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    106140177
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    106140177
Ribosome biogenesis [BR:atra03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    106140177
Transfer RNA biogenesis [BR:atra03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    106140177
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C ResIII ATPase_2 Death_3
Other DBs
NCBI-GeneID: 106140177
NCBI-ProteinID: XP_013197192
LinkDB
Position
3:join(9362973..9363064,9363152..9363274,9363437..9363679,9364014..9364188,9364503..9364614,9365018..9365220,9365741..9365984,9366330..9366520,9366672..9366773,9366990..9367163,9367602..9367704,9368483..9368655,9368982..9369176,9369764..9370005,9370241..9370477,9370797..9370959,9371252..9371414,9371962..9372119)
AA seq 1030 aa
MADIDSLFDCFEEKEQSESAVHFPNLKKEDPQPSQEQTSNKRPHELVEYADTSQAKKTKP
DEDDADLISDINVDLLSSRIVIHTLETHEGCTHEVAMPPNHEYAPLLPLTSEPAKQYSFI
LDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKY
REFSEEFLDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRD
KERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQHY
IFPAGGDGIHLVVDEKGQFKEDNFNTAMAVLSNAGDDAKGDSARGRRGGARNHNQTNIFN
IVKMIMERNFAPVIIFSFSKKECEAYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLTEEDR
KLPQVENVVPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPARTV
VFTSCQKFDGKDFRFISSGEYIQMSGRAGRRGLDDKGIVILMIDDKITPTVVKGMVQGKA
DPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKAKQKEYSVVS
VEQEHSIAAYCSLRSQLQLLGAQFRSYITRPEYLKPFLQPGRLVKVKTEKYEYDWGIIVN
FRHKTKGKGKRPQEENPLTAEQAIVVDILLHVKKPQSGDADTNIPCPPGDTGEVEVVPVL
HTLIYQVSSLRVYYPKDLRPPDSRKSVLKTIGEVKKRFPNGPPLLNPIKDMKIEDKVFTE
CVEKIKELEERLYAHPLHNDKNRGALTAAYERKQELYEELIAAKAELKKAKSILQMDELK
KRKRVLRRMGYCTAADVIELKGRIACELSSADELLLTELIFNGVFNTLTPEQSAALVSCF
VCDENSSQLSAAGEELRGVLRQLQEYARRIAKVSIDAKMDLDEDEYVSKFKSTLMDVVLS
WAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKLLKR
DIVFAASLYM
NT seq 3093 nt   +upstreamnt  +downstreamnt
atggctgatattgatagtttgttcgattgtttcgaagaaaaagaacaaagtgaatctgct
gttcatttcccaaatctgaaaaaagaggatcctcaaccatctcaagaacagacaagcaac
aaacgacctcatgagctggttgagtatgcagatacaagtcaggcaaaaaaaacaaaacca
gatgaagatgatgcagatttgattagtgatataaatgtagatctccttagttcacgcatt
gtgatacacactttagaaacacatgagggatgcacacatgaagtagctatgccgccaaac
catgagtatgcaccactcctgcctttgacttcggagcccgccaaacagtacagtttcata
ttggacccttttcaaaaagaggcaataatgtgcatagacaacttgcaatcagtattagtg
tctgcacatacttctgcaggaaaaacagttgttgcagaatatgctatagcactctctttg
aaaaacaagcaaagagtaatatacaccacaccaattaaagctctatctaatcaaaagtac
agagagttctcagaagagtttcttgatgtgggtctcatcacgggggatgtgaccattaac
ccttcagcatcatgtcttattatgactacagagattttaagaaatatgttataccgaggc
tctgaaattatgcgtgaagttggttgggtagtttttgacgaaattcactacatgagagat
aaagagaggggtgttgtatgggaagaaaccttgattctcttaccggacaatgtgcactac
gtgtttctatcggcgacgattccgaacgcgcggcagttcgccgagtgggtgtgccgcctg
cactcgcagccctgccacgtggtgtacaccgagtaccgccccactccgctgcagcattac
atattccccgctggtggggatggcattcatcttgtggtcgatgagaagggccaattcaag
gaggacaattttaacacagcgatggcagtactaagcaacgctggggacgacgccaagggt
gactccgcccgcggccggcggggcggagcgcgcaaccacaaccagacaaacatcttcaat
attgtgaagatgatcatggagaggaatttcgcgcctgtcattattttcagctttagcaag
aaggaatgtgaagcatatgcgatgcagatggctaaactggattttaacacaattgaagag
aagaaattagtagacgaagtgtttaacaatgctatggacgtgttgacggaggaggatcgc
aagttgccgcaagtggagaatgtggtcccacttctgcgacgaggtatagggatccatcat
ggcggactactgcccatactcaaggaaactattgagattctattcggattggggctgata
aaggccctttttgcaacggaaacctttgccatgggtttaaacatgcctgccaggacagta
gtgtttacaagttgtcagaagtttgacggaaaggatttcagatttatatcgtcaggagaa
tacatccaaatgtcagggcgcgctggtcgccgtggtttggacgacaaaggtatcgtgatt
ctgatgatcgatgacaagatcacgccgactgtcgtcaagggcatggtgcagggtaaagcc
gaccccatcaactcggcattccatctcacatacaatatggtattaaacctgctgagagtg
gaagaaatcaacccagagtatatgttggagcggagtttctttcaattccagaatcaagct
gcgattcctgaccttattgacaaggtgaaggcgaagcagaaagagtactctgtagtcagc
gtagaacaagagcactctatagcagcgtactgcagtctccgttcacagttgcagctgttg
ggagcgcagttccgctcctacattactaggcccgagtacctcaaacctttcctacaacca
ggcaggcttgttaaggttaaaacagaaaaatacgagtacgactggggtataatagtgaac
ttccggcacaagacgaagggcaaaggcaagaggcctcaagaagagaatccgttgaccgcg
gagcaggcgatagttgtggacattctgctgcacgtgaagaaaccgcagtctggagatgcg
gatacaaatattccatgccctccgggagataccggcgaagtggaagttgttccagtccta
cacacgctcatctaccaagtgagttcactgcgcgtgtactaccctaaagatctacggccg
cctgacagccgaaagtccgtcctaaagaccataggagaagtcaaaaaaaggttccctaat
ggcccgccgctgttgaaccccattaaagatatgaagattgaggataaggtttttacagaa
tgtgttgagaaaattaaagaattagaagaaagattatacgcacatcccctccataacgac
aagaaccgtggggcgctaacagcagcttacgagcggaaacaagaactgtatgaagaatta
atcgcggccaaggcggagttgaagaaagccaagagcatattacaaatggacgaactcaag
aagaggaaacgtgtgttacgtcgaatggggtactgtacggccgctgatgttattgaactg
aagggcaggatagcttgcgaattaagtagcgcggacgagctgctcctgaccgagttgata
ttcaacggcgtgttcaacacactgaccccggaacagagcgccgcgctcgtcagctgcttc
gtgtgcgacgagaactcctcgcagctgtccgccgccggggaggagctcaggggagtgctg
aggcagctccaggaatacgcgcgcagaatagcaaaagtctcgatcgacgccaagatggat
ctcgacgaagacgagtacgtcagcaagttcaagtctacgctcatggatgtggtgctctcc
tgggctaaaggcgccagcttcctgcagatctgcaagatgaccgatgtgtttgaagggtca
ataatccgctgcatgcgtcgtctcgaggaggttcttcggcagctgtgccaagctgccaag
aacatcggcaatacagacttggagaataagttcagtgacgccatcaaattgctcaagaga
gacattgtgtttgcagccagtctttacatgtga

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