Amyelois transitella (navel orangeworm): 106140251
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Entry
106140251 CDS
T09957
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra03030
DNA replication
atra03410
Base excision repair
atra03420
Nucleotide excision repair
atra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106140251
03410 Base excision repair
106140251
03420 Nucleotide excision repair
106140251
03430 Mismatch repair
106140251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atra03032
]
106140251
03036 Chromosome and associated proteins [BR:
atra03036
]
106140251
03400 DNA repair and recombination proteins [BR:
atra03400
]
106140251
DNA replication proteins [BR:
atra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
106140251
DNA Replication Termination Factors
ELG1-RFC complex
106140251
Chromosome and associated proteins [BR:
atra03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
106140251
DNA repair and recombination proteins [BR:
atra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
106140251
Check point factors
HRAD17(Rad24)-RFC complex
106140251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
AAA_16
AAA_14
RCF1-5-like_lid
AAA_24
RuvB_N
Rad17
AAA_11
Mg_chelatase
Viral_helicase1
nSTAND3
AAA_19
AAA_18
MeaB
AAA_5
AAA_assoc_2
MipZ
NTPase_1
IstB_IS21
RNA_helicase
ABC_tran
AAA_28
AAA_23
AAA_25
AAA_3
AAA_30
FtsK_SpoIIIE
CbiA
Motif
Other DBs
NCBI-GeneID:
106140251
NCBI-ProteinID:
XP_013197275
LinkDB
All DBs
Position
21:join(153963..154553,154812..155048,155421..155660)
Genome browser
AA seq
355 aa
AA seq
DB search
MTDDDVTIMEVDEAEPKPSKINKPTTKNTSHLPWIEKYRPQVFTDIVGNEDTVSRLAVFA
RSGNAPNIIIAGPPGVGKTTTILCLARALLGPAFKDAVLELNASNDRGIDVVRNKIKMFA
QQKVTLPAGMHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSR
CAVLRYSKLTDAQILAKILEVCKKENLSYTEEGVSAVVFTAQGDLRSALNNLQSTAQGFG
HISPDNVFKVCDEPHPMLVKNMLESCLKQDIHAAYKVIANLCKLGYAAEDIVSNIFRVVK
TLDAPEETRLAWVRELGLTHMRVADGLAAPLQLAALLARLCRAADPASAKDDPCW
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgatgatgttacaatcatggaggtggatgaagccgaacctaaaccatcaaag
attaataaacctaccacaaaaaacacgtctcacttgccttggatagagaagtacaggcct
caagtttttactgacatagttggcaatgaagacactgtgtctcgtctggctgtatttgca
cggagcggcaatgcgccgaatatcattattgcgggccctcccggcgttggtaaaacaact
acaattttgtgcttagctcgggcattgctgggtcctgccttcaaggacgcagtgttggag
ctaaacgcatctaatgatagaggtatagatgtcgttcgtaataaaatcaagatgtttgca
caacaaaaagtaactctaccagctgggatgcacaagattgtgattctggacgaagcagac
agtatgacagatggcgcacagcaggctttgcgaagaactatggagttgtattccagtaca
acaagatttgctctggcagccaacaacagtgagaagataattgaacctattcagtctcgc
tgtgcagtactgcgatatagcaaactcactgatgctcaaatactggccaagattctagaa
gtttgcaagaaagagaacctatcatacaccgaagagggtgtgagtgcagtggtgttcaca
gcacagggtgaccttcgctcggcactcaataacctgcagtccactgcgcagggcttcggc
cacatcagtccagataatgtgttcaaagtgtgtgacgagccgcaccctatgcttgtcaag
aatatgttggaatcttgtctcaagcaggatatacacgctgcttacaaggtaatagccaat
ctgtgcaagttaggctacgcggcggaggacatagtgagcaacatattccgcgtggtgaag
acactggacgccccggaggagacccgcctggcgtgggtgcgggagctggggctcacgcac
atgcgcgtggcggacgggctcgccgcgccgctgcagctggcggccttgttggccaggctg
tgtcgcgctgcggaccccgccagcgccaaggatgatccgtgctggtga
DBGET
integrated database retrieval system
