KEGG   Amyelois transitella (navel orangeworm): 106140273
Entry
106140273         CDS       T09957                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106140273
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106140273
   03041 Spliceosome [BR:atra03041]
    106140273
   03032 DNA replication proteins [BR:atra03032]
    106140273
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     106140273
Spliceosome [BR:atra03041]
 Complex A
  U1 snRNP components
   Sm proteins
    106140273
  U2 snRNP components
    106140273
 Complex B
  U1 snRNP components
    106140273
  U4/U6.U5 tri-snRNP components
    106140273
 Complex C
  U2 snRNP components
    106140273
DNA replication proteins [BR:atra03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     106140273
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 106140273
NCBI-ProteinID: XP_013197299
LinkDB
Position
22:complement(join(9046337..9046422,9047554..9047863))
AA seq 131 aa
MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLEN
VYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSAILRAQAAGRGRPGGRGGGGHRG
GWQGGSGPSRR
NT seq 396 nt   +upstreamnt  +downstreamnt
atgtctatcggtgtgcctattaaagtacttcacgaggcagagggtcatgtagtgacctgc
gaaactaataccggcgaagtttatcgcggaaagctaatagaagccgaggataacatgaat
tgccagatgactctggtgacagtgacctaccgcgatggacgcgttgcccagttggagaat
gtgtatatcagaggctcaaagatccgatttctgatattaccggacatgttgaagaatgcc
cctatgttcaaacgacaagggaataaaccaaccgccggtcgcggcaagagtgctatattg
agggcacaagctgcgggtcgaggccggccgggcgggcgcggcggcggcgggcaccgcggc
ggctggcagggcggctcggggccctcgagacgctag

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