KEGG   Amyelois transitella (navel orangeworm): 106140490
Entry
106140490         CDS       T09957                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03030  DNA replication
atra03410  Base excision repair
atra03420  Nucleotide excision repair
atra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106140490
   03410 Base excision repair
    106140490
   03420 Nucleotide excision repair
    106140490
   03430 Mismatch repair
    106140490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atra03032]
    106140490
   03400 DNA repair and recombination proteins [BR:atra03400]
    106140490
Enzymes [BR:atra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106140490
    6.5.1.6  DNA ligase (ATP or NAD+)
     106140490
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106140490
DNA replication proteins [BR:atra03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    106140490
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     106140490
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106140490
   NER (nucleotide excision repair)
    Other NER factors
     106140490
   MMR (mismatch excision repair)
    Other MMR factors
     106140490
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 106140490
NCBI-ProteinID: XP_013197539
LinkDB
Position
24:join(7522896..7523120,7523687..7523740,7523979..7524056,7524335..7524479,7524720..7525013,7525102..7525356,7526057..7526260,7527048..7527277,7528163..7528353,7528618..7528749,7529455..7529575,7530548..7530710,7532110..7532273,7533157..7533398,7534492..7534638,7535486..7535618)
AA seq 925 aa
MISIRGIVRACSLVPKFLQPVFNSTILKPHINSFNCYDSYIGFVNKRNMSQKSILSFFKT
TPKKPAELNKEPSLQNDSVASNASEESPVKNEKRLSKRQRLESSDEESAPVSPKTNPEKK
KVKRQRIESSGSESDKSAEDMEVVVRKDVGAVKTYSSPRSKKKALVQEESPKSKIKVKEE
KTTPEPKEKMSPKTEKKTPSLFQNGVTKKIKEAPSSVKQENLSPKSDKDSKTDADSNTDK
DKSKKDSKPFLEKKDNVIVNGAKVAETDYNPAKPKYHPIDDACWTKGQEVPYLALAKTLE
AIEETSSRLKIIEILANYLRSVIVLTPEDLLPSIYMCLNQLAPAHHSLELGIAETYLMKA
VGQCTGRSLAHTRAAARRCGDLGRAAESARAQQRTMGAAARLSARKVFAAFREVARMTGQ
ASVNKKIAKIQSLYVACRQSEARFLIRSFEGKLRIGLAEQSVLQALALAVATTPPCINGE
QILDASKGLSQEEFKSRVDEHALLIKTTYCECPDYERLLPALLQHGVHALPTHCRLEPGT
PLKPMLASPTRGVGEIFDRFEGVQFTCEWKYDGERAQIHVPGDEAPDLTKAKIFSRNQED
NTSKYPDVVRRLPALLKESVRSCVLDCEAVAYDVANKQILPFQILSTRKRKDAQESEIKV
QVCVFVFDLLLLNGRPLVRRPLLQRRALLREHFREVPGEWQFATSKDCTTTEEVQQFLEE
SVKGSCEGLMVKMLTGDNARYDIARRSHNWLKLKKDYLEGVGDSIDAVVLGAYWGRGRRA
GRYGGFLLACRDSGGDEFQALCRLGTGFSDEDLRRLTDSLSQHVIDGPRNYYRYDPSSAP
DVWFAAHAVWELRCADLSLSPAHRAAQGLVAADRGISLRFPRFVREREDKTPEQATTAQQ
IADMYLAQDQVRNQQTKKVDNDDFY
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgatatccatacgtggaattgttcgagcatgtagtttagtaccgaaatttttgcaacca
gtgtttaatagcacaatattaaaacctcatataaactcgttcaactgttacgattcttac
attggttttgttaataaaaggaatatgtcgcagaaaagcattttatcttttttcaagacc
acacccaagaaacctgctgaattgaataaagaaccgtcacttcagaatgattctgtagcc
agcaatgcaagtgaggaatctccggtgaagaatgagaagagattatcaaaacgacaaagg
ctggagagcagcgatgaggagtctgctccggtgtcgcctaaaacaaatcctgaaaagaag
aaagtcaaacgccaaaggattgagagctctggcagtgagtcagacaagtcagctgaagat
atggaagtcgtggtcagaaaggatgttggtgcagttaagacatacagctctcctagaagc
aagaagaaagctttggttcaagaagaatcaccaaaaagtaaaataaaagtcaaggaggag
aaaacaacgccggagcccaaggaaaagatgagtccaaaaactgagaaaaagacaccaagc
ctttttcagaatggtgtcaccaagaagattaaggaggcgccatctagcgttaaacaggag
aacttgtcaccaaagagtgacaaggatagcaagacagacgcggatagcaatacagataag
gacaagagtaaaaaggatagcaaaccatttttagaaaagaaagataatgtcattgtgaat
ggagcgaaagttgcagaaactgactacaacccagccaaacctaaataccacccgatcgac
gacgcctgctggaccaaaggccaggaggtcccgtacttagctctggccaaaaccctagaa
gctatagaagagacgtcgtccagactgaagattatagagatcctggcgaactacctgcgg
tccgtcatagtgctgacgcccgaggacctgctgcccagcatctacatgtgtctcaaccag
ctcgcacccgcacatcacagcttggagttaggcatagcggagacgtacctgatgaaggcc
gtggggcagtgcacgggccgctcgctggcgcacacgcgcgcggcggcgcggcgctgcggc
gacctggggcgggcggccgagagcgcgcgcgcgcagcagcgcaccatgggcgcggccgcg
cgcctctccgccaggaaggtgttcgccgccttccgcgaggtggcgcgcatgaccggtcaa
gcctccgtcaacaagaagatagccaagattcaaagtctctacgtcgcctgccggcaatct
gaagctcgtttcctcatcaggtcttttgaggggaaactccggataggactggctgagcag
tcagtactccaagctttggcattagccgtggctaccacgccgccttgtatcaacggagag
cagatcctggatgcttctaaggggctgagtcaggaagagtttaagagccgcgtggacgag
cacgcgctgctcataaagacgacgtactgcgagtgccccgactacgagcgcctgctgccc
gctctactgcagcatggagtacacgcgctccccacgcactgccggctggagcccggcact
ccgctcaagcccatgctggcgagccccaccaggggggtcggggaaatttttgacaggttc
gaaggcgtgcaattcacatgcgagtggaagtacgacggcgagcgagcgcagatacatgtg
cccggggacgaggcgccagatctcactaaggctaagatcttcagcaggaaccaggaggat
aacaccagcaaatacccggacgtggtgcgccgcctgcccgcgctgctgaaggagagtgtg
agaagctgcgtgctggactgcgaggccgtcgcctacgacgtggccaacaagcagatactg
cccttccagatactgtcgacgcgcaagcgcaaggacgcccaggagtcggagatcaaggtg
caggtgtgcgtgttcgtgttcgacctgctgctgctcaacgggcggccgctggtgcgccgc
ccgctgctgcagcgccgcgccctgctgcgggaacacttccgcgaggtgccaggtgaatgg
caattcgccaccagcaaagactgcaccaccaccgaggaagtccaacagttcctggaggag
tccgtcaagggctcctgcgagggcctcatggtgaagatgctgacaggagacaacgcccgg
tacgacatcgccaggaggtcccacaactggttgaagctgaagaaggactacttagagggc
gtcggcgacagtatagatgcggtggtgctgggcgcgtactggggccgcgggcggcgcgcc
ggccgctacggcggcttcctgctggcgtgccgcgactccggcggggacgagttccaggcg
ctgtgccgcctcggcaccggcttcagcgacgaggacctgcgccggctcactgactcgctg
agtcaacatgttattgacggcccgaggaactattacagatacgatccgtcgtcggcgccc
gacgtgtggttcgcggcgcacgcggtgtgggagctgcgctgcgcggacctgtcgctgtcg
cccgcgcaccgcgccgctcaagggctcgtggccgccgatagagggatctccttgaggttc
cccagattcgtccgcgagcgcgaagacaagacccccgagcaggcgaccaccgcgcagcag
atcgcggacatgtacctcgcccaggaccaggtgaggaaccagcagaccaagaaggtcgac
aatgacgacttctattga

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