KEGG   Amyelois transitella (navel orangeworm): 106140568
Entry
106140568         CDS       T09957                                 
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106140568
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106140568
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106140568
Spliceosome [BR:atra03041]
 Complex C
  Other components
   Step II factors
    106140568
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C S1 WHD_HA2 DEAD GIPC1_GH2 AAA_22 AAA_19 Flavi_DEAD nSTAND3 Sigma54_activ_2 AAA_30 UvrD-helicase
Other DBs
NCBI-GeneID: 106140568
NCBI-ProteinID: XP_013197627
LinkDB
Position
5:complement(join(11611459..11611681,11615566..11615745,11616511..11616707,11617321..11617449,11618061..11618213,11620219..11620359,11620837..11621503,11621820..11622067,11622443..11622955,11623193..11623339,11623651..11623755,11624134..11624295,11624897..11625732,11625961..11626054))
AA seq 1264 aa
MDEVAKLEHLSLVSKVCTELDNHLGLNDKDLAEFIIDLADKNPNFDDFKKALIENGAEFS
DSFMTNLLRIIQHMKPANTSSDTTELDTHKNPLASKFPGLAIPNEKPPVFSSDDESSEEE
EDKKIKRVTAKDVFKDESKPIKNDAVVDAAMAELEALAPSKSDAKVEAVRPDIKKDELKE
SKDRSRKRDSSRDRKSRRSRSRGRRSRSRDRRSRSRDRKRRSRSRHRQRSHSRDRHRSKS
RDRHRSKSRERQRSRERDRRRRSKSRERRSRSRGKRSHSRGREDKYSDYTKRPRKRSPEV
EMSDDPEPGKIYNGRVANIVPFGCFVQIEGVRKRWEGLVHISQLRSEGRVTNVSDVVSRG
DKVKIKVLSVTGQKVSLTMKDVCQESGKDLNPTSHAHLEAEREGRNPDRPAPAAAVLAGL
QGALDPDEDSSRKRVTRISSPERWEIKQMISSGVIDKSELPDFDEETGLLPKDEDGEADI
EIELVEDEPPFLQGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMIQREQE
MESLPTGLNKNWIDPLPETDGRALAANMRGSGITPQDLPEWKKHVIGGKKSSFGKKTNLS
LLEQRQSLPIYKLRDELTKAVADNQILIVIGETGSGKTTQITQYLAECGLTARGKIACTQ
PRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLMDLDLK
SYSVIMLDEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTI
PGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERM
KSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDP
GFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPV
PEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDAEGLLTRLG
RRMAEFPLEPNLSKILIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQ
PEGDHLTLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAG
KNTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQT
TKEYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVR
RRRN
NT seq 3795 nt   +upstreamnt  +downstreamnt
atggatgaagttgctaaattagaacatttgtcccttgtttcaaaagtgtgtactgaatta
gacaatcacttgggtttaaatgacaaggacttggccgagtttatcatagatttagcggac
aagaatccaaattttgacgattttaagaaggcattgattgaaaatggggccgaattttct
gactcattcatgacgaatctcctgcgtataatacagcacatgaaaccagccaatacttct
tccgacaccacagaattagacactcataaaaatcctttagcatccaaatttcctggattg
gcaatacccaatgagaaaccacctgtgttttcatcagatgatgagagtagtgaagaggaa
gaggataaaaagataaaaagagtaactgccaaggatgttttcaaagatgagtcaaagcct
atcaagaatgatgctgttgttgatgctgctatggcggaattggaagctttagccccttct
aaatctgatgccaaagttgaagcagtcagacctgatataaaaaaggatgagctaaaggag
agtaaagaccgcagtcgtaaaagagacagttctagggacaggaagagtagacgtagtagg
agcagaggtaggagaagcaggagtagagataggagaagtagaagtagggacagaaagagg
agatctagaagtagacatcggcagaggtctcattcgagggacagacatcgatctaaatct
agggacaggcataggtcgaagtctagggaaaggcagagatctagagagagagacagacgc
agaaggtccaagtcaagggagaggaggtcgaggtcacgcggcaagaggtcacattctcgt
ggcagggaggataaatatagtgattacacaaagaggccgagaaaacgtagccctgaggtg
gagatgagtgatgaccctgaaccaggaaaaatatataatggcagggtcgcgaacattgta
ccgtttgggtgtttcgtgcaaatagaaggtgtgaggaagagatgggagggtttggttcac
atatcacagctcagatctgagggaagagtcaccaatgtctccgacgtggtgtctagaggg
gacaaagttaagatcaaagtactatcagtgactggtcagaaagtctccctcaccatgaag
gatgtgtgccaagagagtggcaaagatttgaatcccacctcgcatgcacatttggaggcg
gagcgcgaagggcgcaatccagaccggccggcccccgcggcggccgtgctggcggggctg
cagggcgcgctggaccccgacgaggactccagcaggaagcgggtcaccaggatctccagc
cccgagcgctgggagatcaagcagatgatatcatcgggcgtcatagacaaaagcgagctg
ccagatttcgacgaagagaccggtcttctcccgaaggacgaagacggggaagccgatatc
gaaatagagttagtggaagatgagcctcccttcctccagggccacgggcgggccttgcat
gacctgtcacctgtcaggattgtcaaaaaccctgacggatcgctagcccaggcggccatg
atgcaatccgctctagccaaggagagaagggagcagaagatgatacaaagagaacaggag
atggagagtttgccaactggtttgaacaagaattggattgatccgttaccagagacggat
ggtagggctttggctgctaacatgaggggatcaggcatcactccgcaggacttgccggag
tggaagaagcacgtgattggaggcaagaagtcgtcgttcggaaagaagactaatttgtcg
ttgttggaacagaggcagtctctgcctatttataagcttagggatgagttgacaaaggct
gtagctgacaaccaaatcctcatcgttatcggtgagactggctccgggaaaaccactcag
atcactcagtacctcgctgaatgtggtctgaccgctcgagggaagatcgcttgcacccag
ccccggagagtggcggccatgtccgtggccaagcgagtggctgaggagttcggctgtcgc
ctggggcaggaggtgggctacaccatccggttcgaggactgcaccagccccgagaccgtc
atcaaatacatgacagacggcatgttactccgcgagtgtctcatggacctggacctgaag
tcctactccgtgatcatgctggacgaggcccacgagcgcaccatccacacggacgtgctg
ttcggcctcctcaaacaagccgtccagaaacgacctgaactcaaactcatcgtcacctca
gccaccttggacgctgtcaagttctcccaatacttcttcgaagcacccatctttacaata
cccggaagaaccttccccgtagaagtcttatacacgaaagaaccagaaacagactacctg
gatgcgtctcttataaccgttatgcagatacacctgagagaaccgcccggagatatactg
ttatttttgaccggtcaagaggaaatcgataccgcttgcgagattttgtacgagagaatg
aagtctctagggccggacgtgcccgagctgatcattctgccggtgtactcggctctgcct
tcggaaatgcagacccgcatcttcgaaccggccccgcccggctccaggaaagtggtgata
gccaccaacatagcggagacgtcgctgacgatagacggcatatattacgtggtggacccc
ggctttgtgaagcagaaagtgtacaattctaagactggaatggactcgctggttgtaact
ccaatctcgcaggcagcagccaagcagcgggccggtcgagctggtcggacggggcccggg
aaatgttaccgactgtacacagagagggcctacagagacgagatgctgcccacgcccgtg
ccggagatacagcgcaccaacctcgccaccacagtgttacaactgaagacgatgggcatc
aacgatctgcttcacttcgatttcatggacgcgccgcccgtggagtctctcatcatggct
ctcgagcaactgcactcgctgtccgccttggatgccgaggggctactcactagactcggg
cggaggatggccgagttccccctagagccgaacctgtcaaagattctcatcatgtcggtg
gccctgcagtgctccgacgaaatactcacgatcgtgtctatgctcagcgtgcaaaacgtc
ttctaccggccaaaagacaaacaagccctcgccgaccagaagaaagccaagttcaatcag
cccgaaggcgaccatctcaccctgcttgcggtgtacaacagctggcggaacaacaagttc
tcgaacgcgtggtgctacgagaacttcgtgcagattcgaaccctgaagagagctcaggat
gtgaggaaacagctgctgggcatcatggataggcacaaattggacgtggtctccgccggc
aagaacactgtccgtattcagaagacgatctgctcgggcttcttcaggaacgccgcgaag
aaggacccccaggaggggtaccgcaccctggtggacagccaggtggtctacatccacccg
tccagcgcgctgttcaaccggcagcctgaatgggtaatctatcacgagctggtgcagact
accaaggagtacatgcgcgaagtcaccaccatagatccaaaatggctggtagaattcgcg
ccggccttcttcaagttctcagacccaactaaactgtctaaattcaagaagaaccagaga
cttgaacctctttacaataagtacgaggaacccaacgcctggagaatatcgagggtgcga
agaagaaggaattaa

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