KEGG   Amyelois transitella (navel orangeworm): 106141118
Entry
106141118         CDS       T09957                                 
Name
(RefSeq) helicase POLQ-like isoform X1
  KO
K19178  POLQ-like helicase [EC:5.6.2.4]
Organism
atra  Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:atra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atra03400]
    106141118
Enzymes [BR:atra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     106141118
DNA repair and recombination proteins [BR:atra03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   Helicases
    106141118
SSDB
Motif
Pfam: POLQ_helical DEAD Helicase_dom4_arc Helicase_C ResIII HTH_61 HHH_5 Cdd1
Other DBs
NCBI-GeneID: 106141118
NCBI-ProteinID: XP_060800568
LinkDB
Position
6:complement(join(858017..858094,858424..858558,859489..861772,862160..862251,863168..863263,863938..864089,865495..865628,867035..867221,867698..867867,868355..868516,869377..869522,870289..870485,870837..870918,871242..871433,871648..871826,872092..872785))
AA seq 1659 aa
MNSYNKFDVDNTSTPKRRRLGTSRVLCSRDIVNHSPIHRQISSTVISSSGRCESPPLPCN
QVEYLNESEPTSIPCSPGIEGSIMKDVENWESLALTNFRKKNNVLHDTITEDDLSDDMFC
SELEIKSSHDKLVSSNCQNHFKDIEETFDLVNKSICDIDNKVDKSSLFETKDSFLLDIKE
SGILVEEKCKSNEVNKHGRIDQKLCDGDTFYGLPLITKSLFKTFRNIEKFYDWQEECLNL
DAIKERRNLIYALPTSGGKTLVAEVLMLNEVLNRKKNALFILPFVAIVQEKIWALSPFAV
KLEFLVEEYTGGKGHIPPKKRRRKNSIYIATIEKGLALVRSLIELDRLQEIGLIVVDELH
LIGEPGRGGTLETLLTTVIFANKGIQIVGMSATIGNLPSVAKFLRADVFQREFRPVELTE
YVKLGDMLYRIEWGGGMELVPERQLAYDYVPAATALDPDWLGGLVSEVVPQASCLVFCPT
KRNCENVASLLCKLQRREMTSHRTVERQALEAALVGEGASSALTRAVRFGVGFHHAGLAA
DERALLETAFRSGVVSVLCCTSTLAAGVNLPARRVIVRAPRVGREPLSLAAYRQMAGRAG
RAGVSDAGESIIICSASEWPALRTVLAGPLRAARSRLRPPALLLSAAALRLAGTRAEAEE
LMATTFLALDPEINIKEECDASLRSLVQCGALEVSPASEHAPLTVSELGRAAIIGGLELP
VAKQLVEELQAASRGVVLLGSLHLLFVLTPHDAPVSPDYRHYYSLYCNLDEEGLQTAKTL
GITEMNAVRMMTGKPITNVSELVLRRFYLALMLRDLLNQVPSHVVADKYNISRGAVQSLL
SSALSLCNSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGALFE
TAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGALFETAFETSLSVRYNISRGAVQ
SLLSGALSLCNSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGA
LFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGALFETAFETSLSVRYNISRG
AVQSLLSGALSLCNSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRL
CGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGALFETAFETSLSVRYNI
SRGAVQSLLSGALSLCNSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSA
VRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGALFETAFETSLSVR
YNISRGAVQSLLSGALSLCNSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLC
NSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGALFETAFETSL
SVRYNISRGAVQSLLSGALSLCNSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGAL
SLCNSAVRLCGALFETAFETSLSVRYNISRGAVQSLLSGALSLCNSAVRLCGALPALCWW
RALLAELAPRLQPWQPELIALMELPAVRKARAMQLLRAGYKRIEDLAKANADDLCSSVSH
LSRTAASHLISAARMMLIEKVENLRAEAEEVMEDLSVLS
NT seq 4980 nt   +upstreamnt  +downstreamnt
atgaattcgtataacaaatttgatgttgataatacttccacaccgaaacgaagacgattg
ggtacaagcagggtattgtgctcaagagatatcgtaaaccacagtcctattcaccgtcag
atatcgtcaactgtgatcagctcctcgggtagatgtgaatctccgcctctgccgtgcaat
caggtagagtacttgaacgaatccgaacctacaagcattccatgttctcctggtatcgag
ggctcaatcatgaaagatgttgagaattgggaatcattagcattgacaaattttcgtaaa
aagaacaatgtgttacacgacaccatcactgaagatgatttatcggatgatatgttttgt
tcagaattagaaataaaatctagtcacgataaacttgtgtcttcaaactgtcaaaatcat
tttaaggatatagaggaaacatttgacttagtgaataaatcaatatgtgatatagataat
aaggttgacaaaagttctctgtttgagacaaaggattcatttttattagatatcaaagaa
agtggtatattagttgaagagaaatgcaaatcaaatgaagtaaacaaacatggaaggata
gatcagaaactgtgtgacggggacacattttatggtttgccattgataacaaaaagttta
ttcaaaactttcaggaatattgagaaattttatgactggcaagaagaatgcctgaatcta
gacgccatcaaggaaagacgtaacctcatctatgcgttacccacgagcgggggtaaaacc
ctcgtggctgaggtgctgatgctgaatgaagttctcaataggaaaaagaatgcactgttt
attcttccttttgttgctattgtacaagaaaagatttgggcattgtctccatttgcagtg
aaacttgaatttttagtcgaggaatacacagggggtaaaggccacattccccccaagaag
aggagaagaaaaaatagcatctacatcgctactatagagaaaggactcgcgttagttcgg
agcctcattgagttggatcgcttgcaagagattggccttattgtggttgatgagctgcat
ctcataggggagcctggacgaggtggaaccttggagacattgctcacgactgtcattttt
gccaataaaggcattcaaatagtgggaatgagtgccacaataggcaacttgccttcagtg
gcgaagttcctccgcgctgacgtcttccaacgggagttcaggcctgtggagctgacagag
tacgtcaagttgggggacatgctgtacaggatcgagtgggggggcggcatggagctggtg
ccggagaggcagctggcttatgattatgtgccagcagctacagcgttagaccccgactgg
ctgggaggcctagtgtcggaggtggtgcctcaggcgtcctgcctggtgttctgccccacc
aagcggaactgcgagaacgtcgcctccttgctatgcaagctgcagaggagagagatgacg
tctcaccgcactgtagagcggcaagcgttagaggccgcgttagtgggtgagggcgctagt
tcggctctgacccgcgctgtgaggttcggagtggggttccaccacgcggggctggcggcc
gatgagagggcgctgctggagactgctttcaggtccggagtggtgtcagtgctgtgctgc
acttccacactggcggcgggcgtgaacctacccgcgcggcgtgtgatcgtgcgcgcgccg
cgcgtgggccgcgagccgctgtcgctggccgcctaccgccagatggcgggccgcgcgggc
cgcgcaggcgtctctgatgcgggtgagagcataataatctgcagcgcgtccgagtggccc
gcgctgcgcaccgtcctcgccgggccgctgcgcgccgcccgcagccggctgcggccgccc
gcgctgctgctgagcgcggcggcgctgcggctggccggcaccagggctgaggccgaggaa
ctgatggccaccaccttcctggctctcgatccagaaataaatataaaagaagaatgcgac
gcgtccctccgctctctcgtgcaatgcggcgcgctggaagtgtcgccggctagcgagcac
gcgccgctcaccgtcagcgaactgggacgagctgccattataggaggtttagagctgcca
gtagccaagcagctggtggaggagctgcaggcggcctcccggggcgtggtgttgctcggc
agcctgcacctgctgttcgtgctgactccgcacgacgcgcccgtcagccccgactacagg
cactactactcgctgtactgcaacttggacgaggaaggactgcaaacggccaagacatta
ggcattacagagatgaatgcagtcagaatgatgaccgggaaacccattactaacgtttcc
gagttggtgctgcgccgtttctacttggctctgatgctgcgtgatctcttgaatcaggtg
ccttcacatgtagtcgctgataaatacaacatatcgcgcggcgcggtgcagtcgctcctg
agcagcgcgctgtcgctctgtaacagcgcggtccgcctgtgcggcgcgctgtttgaaact
gcttttgaaacttcgttgtctgtcagatacaacatatctcgcggcgcggtgcagtcgctc
ctgagcggcgcgctgtcgctctgtaacagcgcggtccgcctgtgcggcgcgctgtttgaa
actgcttttgaaacttcgttgtctgtcagatacaacatatctcgcggcgcggtgcagtcg
ctcctgagcggcgcgctgtcgctctgtaacagcgcggtccgcctgtgcggcgcgctgttt
gaaactgcttttgaaacttcgttgtctgtcagatacaacatatctcgcggcgcggtgcag
tcgctcctgagcggcgcgctgtcgctctgtaacagcgcggtccgcctgtgcggcgcgctg
tttgaaactgcttttgaaacttcgttgtctgtcagatacaacatatctcgcggcgcggtg
cagtcgctcctgagcggcgcgctgtcgctctgtaacagcgcggtccgcctgtgcggcgcg
ctgtttgaaactgcttttgaaacttcgttgtctgtcagatacaacatatctcgcggcgcg
gtgcagtcgctcctgagcggcgcgctgtcgctctgtaacagcgcggtccgcctgtgcggc
gcgctgtttgaaactgcttttgaaacttcgttgtctgtcagatacaacatatctcgcggc
gcggtgcagtcgctcctgagcggcgcgctgtcgctctgtaacagcgcggtccgcctgtgc
ggcgcgctgtttgaaactgcttttgaaacttcgttgtctgtcagatacaacatatctcgc
ggcgcggtgcagtcgctcctgagcggcgcgctgtcgctctgtaacagcgcggtccgcctg
tgcggcgcgctgtttgaaactgcttttgaaacttcgttgtctgtcagatacaacatatct
cgcggcgcggtgcagtcgctcctgagcggcgcgctgtcgctctgtaacagcgcggtccgc
ctgtgcggcgcgctgtttgaaactgcttttgaaacttcgttgtctgtcagatacaacata
tctcgcggcgcggtgcagtcgctcctgagcggcgcgctgtcgctctgtaacagcgcggtc
cgcctgtgcggcgcgctgtttgaaactgcttttgaaacttcgttgtctgtcagatacaac
atatctcgcggcgcggtgcagtcgctcctgagcggcgcgctgtcgctctgtaacagcgcg
gtccgcctgtgcggcgcgctgtttgaaactgcttttgaaacttcgttgtctgtcagatac
aacatatctcgcggcgcggtgcagtcgctcctgagcggcgcgctgtcgctctgtaacagc
gcggtccgcctgtgcggcgcgctgtttgaaactgcttttgaaacttcgttgtctgtcaga
tacaacatatctcgcggcgcggtgcagtcgctcctgagcggcgcgctgtcgctctgtaac
agcgcggtccgcctgtgcggcgcgctgtttgaaactgcttttgaaacttcgttgtctgtc
agatacaacatatctcgcggcgcggtgcagtcgctcctgagcggcgcgctgtcgctctgt
aacagcgcggtccgcctgtgcggcgcgctgtttgaaactgcttttgaaacttcgttgtct
gtcagatacaacatatctcgcggcgcggtgcagtcgctcctgagcggcgcgctgtcgctc
tgtaacagcgcggtccgcctgtgcggcgcgctgtttgaaactgcttttgaaacttcgttg
tctgtcagatacaacatatctcgcggcgcggtgcagtcgctcctgagcggcgcgctgtcg
ctctgtaacagcgcggtccgcctgtgcggcgcgctgtttgaaactgcttttgaaacttcg
ttgtctgtcagatacaacatatctcgcggcgcggtgcagtcgctcctgagcggcgcgctg
tcgctctgtaacagcgcggtccgcctgtgcggcgcgctgtttgaaactgcttttgaaact
tcgttgtctgtcagatacaacatatctcgcggcgcggtgcagtcgctcctgagcggcgcg
ctgtcgctctgcaacagcgcggtccgcctgtgcggcgcgctgccggcgctgtgctggtgg
cgcgcgctgctggcggagctggcgccgcgcctgcagccgtggcagcccgagctgatcgcg
ctgatggagctgcccgccgtcaggaaggctagagcgatgcaactgttgcgagctggctac
aaacgtattgaagacttggcaaaggcgaacgcagacgatttgtgttcgtctgtctcccat
ttatcgagaactgcggccagccacctcatcagtgctgctagaatgatgttaatagaaaaa
gttgaaaatcttcgcgccgaagcggaagaagtgatggaagatctcagtgtactatcttaa

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