Amyelois transitella (navel orangeworm): 106142165
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Entry
106142165 CDS
T09957
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2
KO
K14793
ribosomal RNA-processing protein 9
Organism
atra
Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atra03009
]
106142165
Ribosome biogenesis [BR:
atra03009
]
Eukaryotic type
90S particles
Other 90S particles
106142165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_DCAF12
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
RMC1_N
PROPPIN
KNTC1_N
Beta-prop_WDR35_TULP_N
Glu_cyclase_2
VPS8_N
Motif
Other DBs
NCBI-GeneID:
106142165
NCBI-ProteinID:
XP_013199289
LinkDB
All DBs
Position
12:complement(8942737..8944086)
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AA seq
449 aa
AA seq
DB search
MSSSFFLKGKSRQIHKRKGEKIKKIKPKKQNGPNLENGHDSSESDLDIKKFSDAEEVESD
HETAEQKKLRLAKKYLEEIEREEAKRAELKEIDDAVEKRLQKDYLEQKGKLKVEVADNYS
TPSANDLRLIRAKEHRLTLTCVCVSFDGQYVFTGSKCGTIIKWSIKEKRKLGSLTYKTHS
QFLKGGISSLALSTDNKFLASSDQSSEIQIWEPNTLKHLHTFRGHKDTVNGIIFRKNTHE
LYSASKDRSVKIWSLDEMAYVETLFGHQSAVMSIDALTRERAITAGGRDSSVRIWKIVEE
SQLIFNGPVGSLDEVKLLDEEHFVSGSDNGSLCLWGVMKKKPLCVVPEAHGKENEVPRWI
TSLATLLNSDIFASGSYDNCIRLWKVSDMYRKVVPLFSIEVNGFVNAMQFTSDGKQLYAA
VGQEHKSGRWFKLGSAKNGLLVVNFNVKS
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctctttttttctaaaaggtaaatcaaggcaaatacataagagaaaaggtgag
aaaataaaaaaaattaaaccgaagaaacagaatggtcctaacctagaaaatgggcacgat
tcttctgaaagtgatttggatatcaaaaagttttccgatgctgaagaagtcgagagtgat
catgaaactgcagagcagaaaaagttgcgtctagcaaagaaatatttggaagaaatcgaa
agggaagaagcaaagagagccgaactcaaagaaatcgacgacgccgttgagaagagattg
cagaaagactatttggagcaaaagggcaaattaaaagttgaagtagctgacaattacagc
acgccgtctgcaaatgatttgcggctgatacgcgcaaaggaacaccggctaactctcacc
tgtgtttgtgtcagttttgatgggcagtatgtttttactggcagcaagtgtggtacaatt
atcaagtggagcatcaaagaaaaacggaaattaggtagcttgacttacaaaacccattca
caatttctaaagggaggaattagttctttagcattgtcaacagacaataaatttttagca
tcctctgatcaatcttctgaaattcaaatttgggagccaaacacattaaaacatttgcat
acctttagaggtcataaagacacagtgaatggaattatatttaggaaaaatacacatgaa
ttgtattcagcgagcaaagacaggtctgttaaaatttggtctttggatgaaatggcatat
gtggaaactttgtttggacaccagtctgcagtcatgtctattgatgctttgacaagagag
cgagcaatcacagctggtggcagagactcttcagtgcgcatatggaaaatagttgaagaa
tcacaattgattttcaatgggcctgtgggaagtcttgatgaagtgaaattgttggatgag
gaacattttgtctcgggtagcgataatggttcactttgtctttggggtgttatgaagaag
aagccgttatgtgtggtccctgaagcgcacgggaaagaaaacgaagtgccccgatggatc
actagtcttgcaactttgttaaattctgatatttttgcatcaggttcctatgacaattgc
attagattatggaaagtgagtgatatgtataggaaagttgtaccattatttagtatagaa
gtgaatggttttgtgaatgctatgcagttcactagtgatggaaagcaactgtatgctgcc
gttggacaggaacataagtctggtagatggtttaagttagggagtgcaaaaaatggacta
ttagttgttaattttaatgttaaatcatag
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