KEGG   Amyelois transitella (navel orangeworm): 106142311
Entry
106142311         CDS       T09957                                 
Name
(RefSeq) transcriptional repressor CTCF isoform X1
  KO
K23195  transcriptional repressor CTCF
Organism
atra  Amyelois transitella (navel orangeworm)
Brite
KEGG Orthology (KO) [BR:atra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:atra03000]
    106142311
   03036 Chromosome and associated proteins [BR:atra03036]
    106142311
Transcription factors [BR:atra03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    106142311
Chromosome and associated proteins [BR:atra03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    106142311
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-C2H2_16 zf-H2C2_5 Zf-C2H2_ZNF451_C zf-C2H2_7th_ZNF462 zf-C2H2_jaz zf-C2HE zf-C2H2_11 zf-met
Other DBs
NCBI-GeneID: 106142311
NCBI-ProteinID: XP_013199482
LinkDB
Position
Z:join(12294500..12294534,12295375..12295457,12296113..12296252,12296982..12297125,12298083..12298273,12298806..12298975,12299465..12299601,12303087..12303237,12304122..12304288,12305256..12305392,12306647..12306765,12307388..12307512,12309340..12309556,12310676..12310803,12311096..12311152)
AA seq 666 aa
MKSVKTPGKVFRMPPDKKGKGKSLIPTFINQSNTATVLTVNGEEEQDANAGITYFVDEEG
RYYYQPAGDNQNIVSLPATVSQENVQNIEAAMPEDEQMMVDGDRYQTVTIMPSETSTGEV
SYVLVVQDQVGKVEQEEKNDDVYIFDEEEANDEEQQQSEAEELLEKKPKPVTGGKKTSRQ
YLRPHFTCSFCTYTSHRRYLLLRHMKTHSEDRPHKCNVCERGFKTVASLQNHLNMHNGVK
PHICKYCKSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQ
CPHCTYASPDMFKLKRHLRTHTGEKPYKCDHCNMCFAQSNSLKAHKLIHNVAEKPVFACE
LCPAKCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSCKVHNKTHEGEKCYKCELCP
YASTTLRHLKSHMLKHTDEKPFVCDLCDQSFRQKQLLRRHQNIYHNPNYVAKPPKEKTHT
CHECKRTFAHKGNLIRHLAVHDPDSGHQERAMALKIGRQRQVKIIDGEIHVEEPMSPEHE
ESGNEEEEAAANIVKLGIDQLKRGEIVPVSDGDGEQYVFLEVIQLEDGSEQQVALVAPDY
MEEEQEEEEEEDEEEQEVKDVKQVVVAARAAERNIKLEKDVDTCFGFDEEEEPEEEFNEK
IVLRLG
NT seq 2001 nt   +upstreamnt  +downstreamnt
atgaaaagtgttaaaactccagggaaagtgttcaggatgcctccagataaaaaggggaaa
ggcaagagccttattccgactttcatcaatcaaagcaacacagctactgtcctcactgtg
aatggtgaagaagaacaggatgccaacgcaggtatcacttactttgtggacgaggagggg
cgctattattaccagcccgcaggggacaaccagaacattgtctccttgcccgcaacagtc
tctcaagaaaatgtgcagaacatagaagcggcaatgcctgaagatgagcagatgatggtg
gacggggaccgttaccagaccgtcaccatcatgccatcggagaccagcactggggaggtc
agctatgttcttgtggttcaagatcaagtgggaaaggtggaacaagaagagaagaacgat
gatgtgtacatatttgacgaggaggaggccaacgatgaggagcaacaacagtccgaagcc
gaggagctgcttgagaagaaaccgaagccggtcactggtggcaagaagacctcccgtcag
tacttgaggccacatttcacatgcagtttctgtacatacaccagtcacaggaggtacctc
ctccttcgccacatgaagactcactctgaggaccgcccgcacaagtgcaatgtgtgcgag
cgcggtttcaagactgtcgcctcgttgcagaatcatttgaacatgcacaacggagtcaaa
ccgcacatctgcaagtattgcaagagtccattcacgacgtccggtgaactcgtgcgccac
gtccggtacaaacacacgcacgagaagccgcacaagtgttcggaatgcgactacgcgtct
gtggaactgtctaagctacgccgtcacgttcgatgccacactggagaacgaccttatcag
tgcccacactgcacgtacgcctctccggacatgttcaagctgaagcgtcaccttcgaacg
cacacgggggagaagccttacaagtgcgatcactgcaacatgtgtttcgctcagtccaac
tcgctgaaagcacacaaactcatacacaatgttgccgaaaagcctgtgttcgcttgtgag
ctatgcccggccaaatgtggtcgcaaaactgacctccgcatacacgttcagaaactgcac
acttctgacaaaccgctgaagtgcaaacgatgcggaaaatctttccccgaccgctactct
tgcaaagttcacaataagacacacgaaggcgagaagtgctacaagtgcgaactgtgcccg
tacgcttcgaccacgctcagacatctcaagtctcacatgctgaagcacactgacgagaag
ccgttcgtttgcgatctgtgcgaccagtcgttcaggcaaaagcagttgctgcggcggcat
caaaacatataccacaatccgaattacgtggccaagccgcccaaggaaaagacgcacact
tgccacgaatgtaaacggacctttgcacataaaggcaacctgatccggcatttggccgtc
cacgaccctgactccggccaccaggagcgggccatggcgctgaagatcggcaggcagagg
caggtcaagatcattgatggagaaatacatgtggaagagcctatgtcgccggagcacgag
gagtcaggaaacgaggaggaagaggcagctgccaacatcgtgaagctgggcatcgatcag
ttgaagaggggggagatagttccggtgtcggacggcgacggggagcagtacgtgttcctc
gaggtgatccagctggaagacggcagcgagcagcaggtggcgctggtggcgcccgattat
atggaggaggagcaagaagaggaagaagaagaagatgaggaagaacaagaagtgaaggat
gtgaagcaggtggtggtggcggcgcgggcggccgagcggaacattaaattggagaaggat
gttgacacttgcttcgggttcgacgaggaggaagagcccgaagaagaattcaatgagaaa
atcgttctccgtctgggttaa

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