Amyelois transitella (navel orangeworm): 106142575
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Entry
106142575 CDS
T09957
Name
(RefSeq) pre-mRNA splicing regulator USH1G isoform X1
KO
K21878
Usher syndrome type-1G protein
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
106142575
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
atra03037
]
106142575
Cilium and associated proteins [BR:
atra03037
]
Primary cilia and associated proteins
USH complex and associated proteins
106142575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank_4
Ank
Ank_3
Ank_5
SAM_1
SAM_2
SAM_EPH
SAM_7
UPF0236
SAM_Ribosomal_mS41
YfdX
SAM_TNK
PPDFL
DUF2262
Hanta_nucleocap
Motif
Other DBs
NCBI-GeneID:
106142575
NCBI-ProteinID:
XP_013199831
LinkDB
All DBs
Position
12:complement(join(8298676..8298947,8300118..8300248,8301253..8301375,8302280..8302452,8303361..8303521,8304637..8304863,8306313..8306534,8308883..8309026,8313568..8313590))
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AA seq
491 aa
AA seq
DB search
MTTDRFHKAAKDGLLEVLREATRKECNNKDESGMTPTLWAAFEGHIEALRLLCGRGGEPD
KADYFGNTALHFAAARGHKECVTFLVNFGANVFAIDVDGHTAQELAAINGRDDILRFLDQ
ATAKLENNDKKKAKAFKDKARKDYEKYQKQYQKRQSKAEVLAEKELKKLAKEWDQGYNED
VAPMPHRPSNVLLALKQKMIRSTSQGNLLSEEQPRPTYSALVGTVNSAARGRGAVYKKAL
ASKLKNSTVGRTGPNDDFKIGEVETTGRRSVTSLSGVRRDSEVMYVGTFGSGPQQRGNVA
DVFTDNTETRGKASLTRSVSQPDFTAAAGEDSGIGQEVLLQEPASIFDRPGFGSVAFRRS
ITATLSALPAISPGEDLSIGSAGSLAARHAYQPNEWNSAQSESSTITSDEEGETEETGYA
SLERFLTAWGLAQYVQKFKDEQIDLDALMLLTEADMKSLGLPLGPYRKLVTAVQERKQAL
AHPGAIIDSAI
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgacaacggacagatttcataaagctgccaaagacggtctcctggaggtgcttcgggaa
gcaaccaggaaggaatgcaacaacaaggacgagtcggggatgacccccaccctttgggcc
gccttcgaggggcacatcgaggctttaaggttgctgtgtggaagaggaggcgagcctgac
aaagcagattacttcggcaacacggcgcttcacttcgcggccgctagagggcacaaggaa
tgcgtcacgtttttagtaaattttggcgccaacgtgttcgcaatagacgtagacggacac
actgcgcaggagttggcggccatcaatggaagggatgatatattgaggttcttggaccag
gccactgctaagctggagaataatgataaaaaaaaggcaaaagccttcaaagacaaagcg
agaaaagactacgaaaagtaccagaaacagtatcaaaagaggcaaagcaaagccgaggtg
ttggcggagaaggaactaaagaagttagctaaagagtgggaccagggttacaacgaagat
gtggccccaatgccgcatagacccagcaatgtgctgctggctcttaagcagaagatgatc
aggtctaccagccaaggaaacctcctatcagaagagcagcctcggcctacatacagtgcg
ctcgtgggcacggtcaactccgctgcgagaggcagaggtgccgtttacaagaaggccttg
gccagcaagctcaagaatagcaccgtgggcaggactggacctaatgatgacttcaagatc
ggcgaagtagaaactactggtcgtcgctcggtgacgtcattgtctggcgtccgccgggat
tcggaagtaatgtacgtcggtaccttcggctcgggacctcaacagaggggcaatgtggcc
gacgtatttacggataacactgaaacacgcggcaaggcttctttgaccagatcagtcagc
caaccagatttcacggcggcggcgggtgaagacagcggcatcggacaagaagtacttttg
caagaaccagccagcatatttgataggcccggatttggaagtgttgcgttcaggcgatca
ataacggcgactttgagcgcgttaccggccatttcccccggcgaggacctgtccatagga
tcggccggctccctcgccgccaggcacgcctaccaacccaacgaatggaactccgcacag
tcagagagttctacaataacgtctgacgaagaaggtgaaactgaggagacgggttacgct
tccctcgagcgattcctgaccgcgtggggcttggcccagtacgtgcagaaattcaaagac
gaacaaatagacttggacgccctgatgttgctgactgaggccgatatgaagtcgctgggt
cttcccctgggaccgtacaggaagttggtcaccgccgtccaggagaggaagcaggctctg
gctcaccctggagcgataatcgattcggcgatatga
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