Amyelois transitella (navel orangeworm): 106142692
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Entry
106142692 CDS
T09957
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
atra
Amyelois transitella (navel orangeworm)
Pathway
atra04140
Autophagy - animal
atra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
atra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106142692
04148 Efferocytosis
106142692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atra04131
]
106142692
Membrane trafficking [BR:
atra04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106142692
Hops complex
106142692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf-C3HC4
zf_RING_Vps8
zf-RING_UBOX
zf-RING_2
zf-RING_Vps41
zf-RING_5
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
106142692
NCBI-ProteinID:
XP_013200015
LinkDB
All DBs
Position
12:complement(join(2072584..2072819,2073194..2073359,2074030..2074095,2074357..2074508,2075132..2075301,2076184..2076430,2077029..2078016,2078419..2078730,2079510..2079841,2080121..2080379))
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AA seq
975 aa
AA seq
DB search
MTSILDQYEQAAQVSQRAKPVEETMTSSGYINVQPEDNTPMFSKQKMNFNPSDVITHGAV
ASDYLVLAMANGNLFRMDLKMPNHHEEIKYTKYIQPNTKLTGLFLDPLGFHLLMAFAPRT
KDGNPELVYLHRKSLKLKSVTKSRSYEVTEVGWNNENTFEITTGPILLGTSQGHIIETEL
EADNDKMFTANQQYWRQIFDIGQGTDMPITGIQSHRVANTTKYYIFITTPTRLYQFMGNA
VTTDGRPSLQALFYQYLTMPDTGFQEIPSTLKYSKLQFHYDRDGTPKSFAWLTEPGIFYG
QLDPTSQQNSNTLFTQGELINYPPEDGPESESKDKAPLSFVLTEFHALLMYSDKIRAVSL
LNQECVYEDRFSEAHGKLKNIIKDVKRRTVWAITEKTVFRYKVVKEERNVWRIYMEKEQF
DLAKEYCQQNPVYVDIINVKQAELLFSKGKYEESAMVYADTQSSFETICLKFLEQDQISA
LQIYLSKRFDALEDDDKTLISMVVIWMTELYLSQLGLLRRTGKENTDEYSRIQSDFDVFL
VHPKVSKCMQHVKKVIYDLMSSHGDKQNLIKLTLMNEDYENVVAQNIYRKSYVEALKTLQ
ELRKPELFYQFAPVLMEEDPKRTVNALISQGPRLIPSKLLPAFLSCENDEAHISEIIRYL
EFMVQNYNVKDRAIHNYLLTLYSEHDHQALMRYLDRQGSDAVLVNYDVHYALRLCREKNL
TEACVKLSALLSLWQAAVELALQVSLPLAKSVADQPEDIQLQRSLWRHIAEHVITKNQDL
GEAMSFLHECPLIKIEDLLPFFSDVVTIDHFREPICQSLQEYNNQIEELKAEMEEATKSA
ELVRSEIQSFRNRSVHVSVTDECCLCEITLLLRPFYLFPCGHKFHSDCLLAEIQPILGPA
RRNKLQDIQTRLSVLPAIELNTRTSSGLPLRELLKNEIDDIVASECLYCGEYMINCIDKP
FISDEDWDKVMKEWE
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgatactcgatcagtacgagcaagctgcccaggtttcgcagcgcgcgaaacct
gtggaggaaaccatgacttcttcagggtatataaatgtgcaaccggaagacaacactcca
atgttttctaaacaaaagatgaacttcaacccgtctgatgtgatcactcatggagctgtc
gccagcgactacctggtgcttgctatggctaacggaaatctttttaggatggacctgaaa
atgccaaaccatcatgaagaaataaaatatacaaaatatattcaaccgaacactaagctg
actggtttatttcttgatccacttggctttcatcttcttatggcattcgcaccaagaacc
aaagacggcaacccagaattagtttaccttcaccgtaagagtttaaaattgaaatctgtt
accaaatcacgatcttatgaggtgacagaagttgggtggaacaatgagaacacatttgaa
atcacaactggtccgattttactgggcacctctcaaggtcacatcattgagacagaatta
gaagcagacaatgacaaaatgtttacggccaaccagcagtattggcgacagatctttgac
atcggccaaggcacagacatgcccatcaccgggatccaatcacaccgcgttgccaacact
actaaatactacatcttcatcacaacccctacaagattgtaccagttcatgggcaatgct
gtgaccacggacggcaggccgagcctccaggccctcttctaccagtacctcaccatgccg
gacacgggcttccaagaaataccgtccacactaaaatactccaaactgcagttccattat
gacagagacgggacgccgaagagcttcgcctggttgacagagcctggcatcttttatgga
caattggatccaacatcgcaacaaaactctaacactctatttactcaaggcgaactcata
aattaccctccagaagacgggcccgagtcggaatccaaagataaggcgcctctgtcattc
gtccttacagagttccacgctctgcttatgtactccgacaagatccgagccgtctccctt
ctaaaccaagagtgtgtctacgaagaccgcttctcagaggctcatggaaaactcaagaat
attatcaaagatgtgaaaagaagaaccgtgtgggcgattactgaaaagacagtgttcaga
tacaaagtggtcaaagaagagaggaatgtctggaggatctatatggagaaggaacaattc
gatttggctaaagagtattgtcagcagaatcccgtttacgtggatattattaatgtgaaa
caagctgaactactcttttctaaaggaaagtatgaagagagtgctatggtctatgctgac
actcaaagcagtttcgaaactatatgcctgaaattcttagagcaagaccagatatctgcc
ttacaaatatatttgtccaagcgatttgatgccttagaagatgacgataagactctaatt
tcaatggtcgttatttggatgactgagctatatctgtctcaactcggtctcctaagaagg
acagggaaggaaaatacagacgagtacagccgcatacaaagtgatttcgatgtgttttta
gtgcaccctaaagtgtcgaaatgtatgcagcatgttaagaaggtgatatatgatttgatg
tcatctcacggtgataagcagaatttgatcaagttgacgttgatgaatgaggactatgag
aatgttgtggctcagaatatatacaggaagtcgtatgtagaagcgttgaagacattgcaa
gagttgaggaagccggagttgttctatcaattcgctccggttctgatggaggaagatccg
aagcgtacggtgaacgctttgatatctcaaggtccaagactgattccgtcaaagctcctt
ccagcgttcctatcctgtgagaacgatgaagcccacatatccgagatcatacggtacctc
gagttcatggttcagaattacaacgtcaaagaccgagctattcacaactatttgctgact
ttgtactcggagcatgatcaccaagccttgatgaggtatctggaccgacagggctcggac
gctgtgttggtcaactatgatgtacattatgctttgagactgtgtcgcgagaagaacctt
acggaagcctgcgtaaaactgtcagctctgctgtcactgtggcaggctgcggtggagctg
gctcttcaagtgtcgctgccgctcgccaagtcggtggcagaccagcccgaagacatccag
ctgcaacgatcgttgtggcgacatattgcggaacacgtgatcaccaagaaccaagacctg
ggtgaagcgatgagcttcctccacgagtgtccgctcatcaagatcgaggatctgctgccg
ttcttcagcgacgtggtcaccatagaccacttcagggagcccatctgtcagtcattgcag
gaatacaacaatcaaatcgaagaattaaaagcagagatggaagaggccacgaaatccgcg
gaattagtgcgttccgaaatccaatcgttccgcaaccgcagcgttcacgtgtcggtgacg
gacgagtgctgtctgtgcgagatcactttgttgctgcggccgttctacctgttcccgtgc
gggcacaagttccacagcgactgtttgctggcggagatacagcctatactaggccccgct
cgtcgcaacaagcttcaagacatccaaacccgcctctcggtgttgcctgccatagagctc
aacactaggacttcgagcggtctacccctgagggaactgctgaagaatgaaatagacgat
atagtggctagcgagtgcttgtattgtggcgagtatatgatcaactgtatagataaaccg
tttatatctgatgaagattgggataaagtaatgaaggaatgggagtaa
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